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A proposed update for the classification and description of bacterial lipolytic enzymes
Bacterial lipolytic enzymes represent an important class of proteins: they provide their host species with access to additional resources and have multiple applications within the biotechnology sector. Since the formalisation of lipolytic enzymes into families and subfamilies, advances in molecular...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6622161/ https://www.ncbi.nlm.nih.gov/pubmed/31328034 http://dx.doi.org/10.7717/peerj.7249 |
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author | Hitch, Thomas C.A. Clavel, Thomas |
author_facet | Hitch, Thomas C.A. Clavel, Thomas |
author_sort | Hitch, Thomas C.A. |
collection | PubMed |
description | Bacterial lipolytic enzymes represent an important class of proteins: they provide their host species with access to additional resources and have multiple applications within the biotechnology sector. Since the formalisation of lipolytic enzymes into families and subfamilies, advances in molecular biology have led to the discovery of lipolytic enzymes unable to be classified via the existing system. Utilising sequence-based comparison methods, we have integrated these novel families within the classification system so that it now consists of 35 families and 11 true lipase subfamilies. Representative sequences for each family and subfamily have been defined as well as methodology for accurate comparison of novel sequences against the reference proteins, facilitating the future assignment of novel proteins. Both the code and protein sequences required for integration of additional families are available at: https://github.com/thh32/Lipase_reclassification. |
format | Online Article Text |
id | pubmed-6622161 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66221612019-07-19 A proposed update for the classification and description of bacterial lipolytic enzymes Hitch, Thomas C.A. Clavel, Thomas PeerJ Biochemistry Bacterial lipolytic enzymes represent an important class of proteins: they provide their host species with access to additional resources and have multiple applications within the biotechnology sector. Since the formalisation of lipolytic enzymes into families and subfamilies, advances in molecular biology have led to the discovery of lipolytic enzymes unable to be classified via the existing system. Utilising sequence-based comparison methods, we have integrated these novel families within the classification system so that it now consists of 35 families and 11 true lipase subfamilies. Representative sequences for each family and subfamily have been defined as well as methodology for accurate comparison of novel sequences against the reference proteins, facilitating the future assignment of novel proteins. Both the code and protein sequences required for integration of additional families are available at: https://github.com/thh32/Lipase_reclassification. PeerJ Inc. 2019-07-08 /pmc/articles/PMC6622161/ /pubmed/31328034 http://dx.doi.org/10.7717/peerj.7249 Text en ©2019 Hitch et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biochemistry Hitch, Thomas C.A. Clavel, Thomas A proposed update for the classification and description of bacterial lipolytic enzymes |
title | A proposed update for the classification and description of bacterial lipolytic enzymes |
title_full | A proposed update for the classification and description of bacterial lipolytic enzymes |
title_fullStr | A proposed update for the classification and description of bacterial lipolytic enzymes |
title_full_unstemmed | A proposed update for the classification and description of bacterial lipolytic enzymes |
title_short | A proposed update for the classification and description of bacterial lipolytic enzymes |
title_sort | proposed update for the classification and description of bacterial lipolytic enzymes |
topic | Biochemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6622161/ https://www.ncbi.nlm.nih.gov/pubmed/31328034 http://dx.doi.org/10.7717/peerj.7249 |
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