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Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
The diagnosis and prognosis of patients with severe chronic disorders of consciousness are still challenging issues and a high rate of misdiagnosis is evident. Hence, new tools are needed for an accurate diagnosis, which will also have an impact on the prognosis. In recent years, functional Magnetic...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6622536/ https://www.ncbi.nlm.nih.gov/pubmed/31295332 http://dx.doi.org/10.1371/journal.pone.0219683 |
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author | Wutzl, Betty Leibnitz, Kenji Rattay, Frank Kronbichler, Martin Murata, Masayuki Golaszewski, Stefan Martin |
author_facet | Wutzl, Betty Leibnitz, Kenji Rattay, Frank Kronbichler, Martin Murata, Masayuki Golaszewski, Stefan Martin |
author_sort | Wutzl, Betty |
collection | PubMed |
description | The diagnosis and prognosis of patients with severe chronic disorders of consciousness are still challenging issues and a high rate of misdiagnosis is evident. Hence, new tools are needed for an accurate diagnosis, which will also have an impact on the prognosis. In recent years, functional Magnetic Resonance Imaging (fMRI) has been gaining more and more importance when diagnosing this patient group. Especially resting state scans, i.e., an examination when the patient does not perform any task in particular, seems to be promising for these patient groups. After preprocessing the resting state fMRI data with a standard pipeline, we extracted the correlation matrices of 132 regions of interest. The aim was to find the regions of interest which contributed most to the distinction between the different patient groups and healthy controls. We performed feature selection using a genetic algorithm and a support vector machine. Moreover, we show by using only those regions of interest for classification that are most often selected by our algorithm, we get a much better performance of the classifier. |
format | Online Article Text |
id | pubmed-6622536 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-66225362019-07-25 Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness Wutzl, Betty Leibnitz, Kenji Rattay, Frank Kronbichler, Martin Murata, Masayuki Golaszewski, Stefan Martin PLoS One Research Article The diagnosis and prognosis of patients with severe chronic disorders of consciousness are still challenging issues and a high rate of misdiagnosis is evident. Hence, new tools are needed for an accurate diagnosis, which will also have an impact on the prognosis. In recent years, functional Magnetic Resonance Imaging (fMRI) has been gaining more and more importance when diagnosing this patient group. Especially resting state scans, i.e., an examination when the patient does not perform any task in particular, seems to be promising for these patient groups. After preprocessing the resting state fMRI data with a standard pipeline, we extracted the correlation matrices of 132 regions of interest. The aim was to find the regions of interest which contributed most to the distinction between the different patient groups and healthy controls. We performed feature selection using a genetic algorithm and a support vector machine. Moreover, we show by using only those regions of interest for classification that are most often selected by our algorithm, we get a much better performance of the classifier. Public Library of Science 2019-07-11 /pmc/articles/PMC6622536/ /pubmed/31295332 http://dx.doi.org/10.1371/journal.pone.0219683 Text en © 2019 Wutzl et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Wutzl, Betty Leibnitz, Kenji Rattay, Frank Kronbichler, Martin Murata, Masayuki Golaszewski, Stefan Martin Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
title | Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
title_full | Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
title_fullStr | Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
title_full_unstemmed | Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
title_short | Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
title_sort | genetic algorithms for feature selection when classifying severe chronic disorders of consciousness |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6622536/ https://www.ncbi.nlm.nih.gov/pubmed/31295332 http://dx.doi.org/10.1371/journal.pone.0219683 |
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