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Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness

The diagnosis and prognosis of patients with severe chronic disorders of consciousness are still challenging issues and a high rate of misdiagnosis is evident. Hence, new tools are needed for an accurate diagnosis, which will also have an impact on the prognosis. In recent years, functional Magnetic...

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Detalles Bibliográficos
Autores principales: Wutzl, Betty, Leibnitz, Kenji, Rattay, Frank, Kronbichler, Martin, Murata, Masayuki, Golaszewski, Stefan Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6622536/
https://www.ncbi.nlm.nih.gov/pubmed/31295332
http://dx.doi.org/10.1371/journal.pone.0219683
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author Wutzl, Betty
Leibnitz, Kenji
Rattay, Frank
Kronbichler, Martin
Murata, Masayuki
Golaszewski, Stefan Martin
author_facet Wutzl, Betty
Leibnitz, Kenji
Rattay, Frank
Kronbichler, Martin
Murata, Masayuki
Golaszewski, Stefan Martin
author_sort Wutzl, Betty
collection PubMed
description The diagnosis and prognosis of patients with severe chronic disorders of consciousness are still challenging issues and a high rate of misdiagnosis is evident. Hence, new tools are needed for an accurate diagnosis, which will also have an impact on the prognosis. In recent years, functional Magnetic Resonance Imaging (fMRI) has been gaining more and more importance when diagnosing this patient group. Especially resting state scans, i.e., an examination when the patient does not perform any task in particular, seems to be promising for these patient groups. After preprocessing the resting state fMRI data with a standard pipeline, we extracted the correlation matrices of 132 regions of interest. The aim was to find the regions of interest which contributed most to the distinction between the different patient groups and healthy controls. We performed feature selection using a genetic algorithm and a support vector machine. Moreover, we show by using only those regions of interest for classification that are most often selected by our algorithm, we get a much better performance of the classifier.
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spelling pubmed-66225362019-07-25 Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness Wutzl, Betty Leibnitz, Kenji Rattay, Frank Kronbichler, Martin Murata, Masayuki Golaszewski, Stefan Martin PLoS One Research Article The diagnosis and prognosis of patients with severe chronic disorders of consciousness are still challenging issues and a high rate of misdiagnosis is evident. Hence, new tools are needed for an accurate diagnosis, which will also have an impact on the prognosis. In recent years, functional Magnetic Resonance Imaging (fMRI) has been gaining more and more importance when diagnosing this patient group. Especially resting state scans, i.e., an examination when the patient does not perform any task in particular, seems to be promising for these patient groups. After preprocessing the resting state fMRI data with a standard pipeline, we extracted the correlation matrices of 132 regions of interest. The aim was to find the regions of interest which contributed most to the distinction between the different patient groups and healthy controls. We performed feature selection using a genetic algorithm and a support vector machine. Moreover, we show by using only those regions of interest for classification that are most often selected by our algorithm, we get a much better performance of the classifier. Public Library of Science 2019-07-11 /pmc/articles/PMC6622536/ /pubmed/31295332 http://dx.doi.org/10.1371/journal.pone.0219683 Text en © 2019 Wutzl et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wutzl, Betty
Leibnitz, Kenji
Rattay, Frank
Kronbichler, Martin
Murata, Masayuki
Golaszewski, Stefan Martin
Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
title Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
title_full Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
title_fullStr Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
title_full_unstemmed Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
title_short Genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
title_sort genetic algorithms for feature selection when classifying severe chronic disorders of consciousness
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6622536/
https://www.ncbi.nlm.nih.gov/pubmed/31295332
http://dx.doi.org/10.1371/journal.pone.0219683
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