The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1

High-coverage long-read sequencing of the Halobacterium salinarum type strain (91-R6) revealed a 2.17-Mb chromosome and two large plasmids (148 and 102 kb). Population heterogeneity and long repeats were observed. Strain 91-R6 and laboratory strain R1 showed 99.63% sequence identity in common chromo...

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Autores principales: Pfeiffer, Friedhelm, Marchfelder, Anita, Habermann, Bianca, Dyall-Smith, Mike L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624760/
https://www.ncbi.nlm.nih.gov/pubmed/31296677
http://dx.doi.org/10.1128/MRA.00429-19
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author Pfeiffer, Friedhelm
Marchfelder, Anita
Habermann, Bianca
Dyall-Smith, Mike L.
author_facet Pfeiffer, Friedhelm
Marchfelder, Anita
Habermann, Bianca
Dyall-Smith, Mike L.
author_sort Pfeiffer, Friedhelm
collection PubMed
description High-coverage long-read sequencing of the Halobacterium salinarum type strain (91-R6) revealed a 2.17-Mb chromosome and two large plasmids (148 and 102 kb). Population heterogeneity and long repeats were observed. Strain 91-R6 and laboratory strain R1 showed 99.63% sequence identity in common chromosomal regions and only 38 strain-specific segments. This information resolves the previously uncertain relationship between type and laboratory strains.
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spelling pubmed-66247602019-07-29 The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1 Pfeiffer, Friedhelm Marchfelder, Anita Habermann, Bianca Dyall-Smith, Mike L. Microbiol Resour Announc Genome Sequences High-coverage long-read sequencing of the Halobacterium salinarum type strain (91-R6) revealed a 2.17-Mb chromosome and two large plasmids (148 and 102 kb). Population heterogeneity and long repeats were observed. Strain 91-R6 and laboratory strain R1 showed 99.63% sequence identity in common chromosomal regions and only 38 strain-specific segments. This information resolves the previously uncertain relationship between type and laboratory strains. American Society for Microbiology 2019-07-11 /pmc/articles/PMC6624760/ /pubmed/31296677 http://dx.doi.org/10.1128/MRA.00429-19 Text en Copyright © 2019 Pfeiffer et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Pfeiffer, Friedhelm
Marchfelder, Anita
Habermann, Bianca
Dyall-Smith, Mike L.
The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
title The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
title_full The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
title_fullStr The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
title_full_unstemmed The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
title_short The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
title_sort genome sequence of the halobacterium salinarum type strain is closely related to that of laboratory strains nrc-1 and r1
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624760/
https://www.ncbi.nlm.nih.gov/pubmed/31296677
http://dx.doi.org/10.1128/MRA.00429-19
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