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The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae

Psychrophilic green algae from independent phylogenetic lines thrive in the polar extreme environments, but the hypothesis that their psychrophilic characteristics appeared through parallel routes of molecular evolution remains untested. The recent surge of transcriptome data enables large-scale evo...

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Autores principales: Zhang, Zhenhua, Qu, Changfeng, Yao, Ru, Nie, Yuan, Xu, Chenjie, Miao, Jinlai, Zhong, Bojian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6628873/
https://www.ncbi.nlm.nih.gov/pubmed/31106822
http://dx.doi.org/10.1093/gbe/evz104
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author Zhang, Zhenhua
Qu, Changfeng
Yao, Ru
Nie, Yuan
Xu, Chenjie
Miao, Jinlai
Zhong, Bojian
author_facet Zhang, Zhenhua
Qu, Changfeng
Yao, Ru
Nie, Yuan
Xu, Chenjie
Miao, Jinlai
Zhong, Bojian
author_sort Zhang, Zhenhua
collection PubMed
description Psychrophilic green algae from independent phylogenetic lines thrive in the polar extreme environments, but the hypothesis that their psychrophilic characteristics appeared through parallel routes of molecular evolution remains untested. The recent surge of transcriptome data enables large-scale evolutionary analyses to investigate the genetic basis for the adaptations to the Antarctic extreme environment, and the identification of the selective forces that drive molecular evolution is the foundation to understand the strategies of cold adaptation. Here, we conducted transcriptome sequencing of two Antarctic psychrophilic green algae (Chlamydomonas sp. ICE-L and Tetrabaena socialis) and performed positive selection and convergent substitution analyses to investigate their molecular convergence and adaptive strategies against extreme cold conditions. Our results revealed considerable shared positively selected genes and significant evidence of molecular convergence in two Antarctic psychrophilic algae. Significant evidence of positive selection and convergent substitution were detected in genes associated with photosynthetic machinery, multiple antioxidant systems, and several crucial translation elements in Antarctic psychrophilic algae. Our study reveals that the psychrophilic algae possess more stable photosynthetic apparatus and multiple protective mechanisms and provides new clues of parallel adaptive evolution in Antarctic psychrophilic green algae.
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spelling pubmed-66288732019-07-18 The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae Zhang, Zhenhua Qu, Changfeng Yao, Ru Nie, Yuan Xu, Chenjie Miao, Jinlai Zhong, Bojian Genome Biol Evol Research Article Psychrophilic green algae from independent phylogenetic lines thrive in the polar extreme environments, but the hypothesis that their psychrophilic characteristics appeared through parallel routes of molecular evolution remains untested. The recent surge of transcriptome data enables large-scale evolutionary analyses to investigate the genetic basis for the adaptations to the Antarctic extreme environment, and the identification of the selective forces that drive molecular evolution is the foundation to understand the strategies of cold adaptation. Here, we conducted transcriptome sequencing of two Antarctic psychrophilic green algae (Chlamydomonas sp. ICE-L and Tetrabaena socialis) and performed positive selection and convergent substitution analyses to investigate their molecular convergence and adaptive strategies against extreme cold conditions. Our results revealed considerable shared positively selected genes and significant evidence of molecular convergence in two Antarctic psychrophilic algae. Significant evidence of positive selection and convergent substitution were detected in genes associated with photosynthetic machinery, multiple antioxidant systems, and several crucial translation elements in Antarctic psychrophilic algae. Our study reveals that the psychrophilic algae possess more stable photosynthetic apparatus and multiple protective mechanisms and provides new clues of parallel adaptive evolution in Antarctic psychrophilic green algae. Oxford University Press 2019-05-20 /pmc/articles/PMC6628873/ /pubmed/31106822 http://dx.doi.org/10.1093/gbe/evz104 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research Article
Zhang, Zhenhua
Qu, Changfeng
Yao, Ru
Nie, Yuan
Xu, Chenjie
Miao, Jinlai
Zhong, Bojian
The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae
title The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae
title_full The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae
title_fullStr The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae
title_full_unstemmed The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae
title_short The Parallel Molecular Adaptations to the Antarctic Cold Environment in Two Psychrophilic Green Algae
title_sort parallel molecular adaptations to the antarctic cold environment in two psychrophilic green algae
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6628873/
https://www.ncbi.nlm.nih.gov/pubmed/31106822
http://dx.doi.org/10.1093/gbe/evz104
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