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Fourier ring correlation simplifies image restoration in fluorescence microscopy
Fourier ring correlation (FRC) has recently gained popularity among fluorescence microscopists as a straightforward and objective method to measure the effective image resolution. While the knowledge of the numeric resolution value is helpful in e.g., interpreting imaging results, much more practica...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6629685/ https://www.ncbi.nlm.nih.gov/pubmed/31308370 http://dx.doi.org/10.1038/s41467-019-11024-z |
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author | Koho, Sami Tortarolo, Giorgio Castello, Marco Deguchi, Takahiro Diaspro, Alberto Vicidomini, Giuseppe |
author_facet | Koho, Sami Tortarolo, Giorgio Castello, Marco Deguchi, Takahiro Diaspro, Alberto Vicidomini, Giuseppe |
author_sort | Koho, Sami |
collection | PubMed |
description | Fourier ring correlation (FRC) has recently gained popularity among fluorescence microscopists as a straightforward and objective method to measure the effective image resolution. While the knowledge of the numeric resolution value is helpful in e.g., interpreting imaging results, much more practical use can be made of FRC analysis—in this article we propose blind image restoration methods enabled by it. We apply FRC to perform image de-noising by frequency domain filtering. We propose novel blind linear and non-linear image deconvolution methods that use FRC to estimate the effective point-spread-function, directly from the images. We show how FRC can be used as a powerful metric to observe the progress of iterative deconvolution. We also address two important limitations in FRC that may be of more general interest: how to make FRC work with single images (within certain practical limits) and with three-dimensional images with highly anisotropic resolution. |
format | Online Article Text |
id | pubmed-6629685 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66296852019-07-17 Fourier ring correlation simplifies image restoration in fluorescence microscopy Koho, Sami Tortarolo, Giorgio Castello, Marco Deguchi, Takahiro Diaspro, Alberto Vicidomini, Giuseppe Nat Commun Article Fourier ring correlation (FRC) has recently gained popularity among fluorescence microscopists as a straightforward and objective method to measure the effective image resolution. While the knowledge of the numeric resolution value is helpful in e.g., interpreting imaging results, much more practical use can be made of FRC analysis—in this article we propose blind image restoration methods enabled by it. We apply FRC to perform image de-noising by frequency domain filtering. We propose novel blind linear and non-linear image deconvolution methods that use FRC to estimate the effective point-spread-function, directly from the images. We show how FRC can be used as a powerful metric to observe the progress of iterative deconvolution. We also address two important limitations in FRC that may be of more general interest: how to make FRC work with single images (within certain practical limits) and with three-dimensional images with highly anisotropic resolution. Nature Publishing Group UK 2019-07-15 /pmc/articles/PMC6629685/ /pubmed/31308370 http://dx.doi.org/10.1038/s41467-019-11024-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Koho, Sami Tortarolo, Giorgio Castello, Marco Deguchi, Takahiro Diaspro, Alberto Vicidomini, Giuseppe Fourier ring correlation simplifies image restoration in fluorescence microscopy |
title | Fourier ring correlation simplifies image restoration in fluorescence microscopy |
title_full | Fourier ring correlation simplifies image restoration in fluorescence microscopy |
title_fullStr | Fourier ring correlation simplifies image restoration in fluorescence microscopy |
title_full_unstemmed | Fourier ring correlation simplifies image restoration in fluorescence microscopy |
title_short | Fourier ring correlation simplifies image restoration in fluorescence microscopy |
title_sort | fourier ring correlation simplifies image restoration in fluorescence microscopy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6629685/ https://www.ncbi.nlm.nih.gov/pubmed/31308370 http://dx.doi.org/10.1038/s41467-019-11024-z |
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