Cargando…

A Preliminary Metagenome Analysis Based on a Combination of Protein Domains

Metagenomic data have mainly been addressed by showing the composition of organisms based on a small part of a well-examined genomic sequence, such as ribosomal RNA genes and mitochondrial DNAs. On the contrary, whole metagenomic data obtained by the shotgun sequence method have not often been fully...

Descripción completa

Detalles Bibliográficos
Autores principales:	Igarashi, Yoji, Mori, Daisuke, Mitsuyama, Susumu, Yoshitake, Kazutoshi, Ono, Hiroaki, Watanabe, Tsuyoshi, Taniuchi, Yukiko, Sakami, Tomoko, Kuwata, Akira, Kobayashi, Takanori, Ishino, Yoshizumi, Watabe, Shugo, Gojobori, Takashi, Asakawa, Shuichi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6630717/ https://www.ncbi.nlm.nih.gov/pubmed/31035705 http://dx.doi.org/10.3390/proteomes7020019

Ejemplares similares

Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters
por: Matsumoto, Kaoru, et al.
Publicado: (2021)

Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan
por: Yoshitake, Kazutoshi, et al.
Publicado: (2021)

Transcriptome Analysis of Yamame (Oncorhynchus masou) in Normal Conditions after Heat Stress
por: Kraitavin, Waraporn, et al.
Publicado: (2019)

Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps
por: Yoshitake, Kazutoshi, et al.
Publicado: (2018)

Gene expression profiles at different stages for formation of pearl sac and pearl in the pearl oyster Pinctada fucata
por: Mariom, et al.
Publicado: (2019)

Whole-Genome Sequencing of 84 Japanese Eels Reveals Evidence against Panmixia and Support for Sympatric Speciation
por: Igarashi, Yoji, et al.
Publicado: (2018)

Piwi-interacting RNA (piRNA) expression patterns in pearl oyster (Pinctada fucata) somatic tissues
por: Huang, Songqian, et al.
Publicado: (2019)

Identification and Characterization of microRNAs and Their Predicted Functions in Biomineralization in the Pearl Oyster (Pinctada fucata)
por: Huang, Songqian, et al.
Publicado: (2019)

Ultrahigh-Density Linkage Map Construction Using Low-Coverage Whole-Genome Sequencing of a Doubled Haploid Population: Case Study of Torafugu (Takifugu rubripes)
por: Zhang, Xiang, et al.
Publicado: (2018)

An Acromegaly Disease Zebrafish Model Reveals Decline in Body Stem Cell Number along with Signs of Premature Aging
por: Elbialy, Abdalla, et al.
Publicado: (2020)

Pilot study of a comprehensive resource estimation method from environmental DNA using universal D-loop amplification primers
por: Yoshitake, Kazutoshi, et al.
Publicado: (2023)

Estimation of tuna population by the improved analytical pipeline of unique molecular identifier-assisted HaCeD-Seq (haplotype count from eDNA)
por: Yoshitake, Kazutoshi, et al.
Publicado: (2021)

Another polymorphic mitochondrial genome of Grampus griseus and phylogeny of family Delphinidae
por: Senevirathna, Jayan Duminda M., et al.
Publicado: (2021)

Selection of a reference gene for studies on lipid‐related aquatic adaptations of toothed whales (Grampus griseus)
por: Senevirathna, Jayan D. M., et al.
Publicado: (2021)

Immunoglobulin light chain (IGL) genes in torafugu: Genomic organization and identification of a third teleost IGL isotype
por: Fu, Xi, et al.
Publicado: (2017)

A Zebrafish Acromegaly Model Elevates DNA Damage and Impairs DNA Repair Pathways
por: Elbialy, Abdalla, et al.
Publicado: (2018)

Exosome-derived small non-coding RNAs reveal immune response upon grafting transplantation in Pinctada fucata (Mollusca)
por: Huang, Songqian, et al.
Publicado: (2022)

A Review of Discovery Profiling of PIWI-Interacting RNAs and Their Diverse Functions in Metazoans
por: Huang, Songqian, et al.
Publicado: (2021)

Simultaneous amplicon analysis of multiple soil samples using MinION sequencing
por: Kurokochi, Hiroyuki, et al.
Publicado: (2021)

Draft genome sequencing and assembly of Risso's dolphin, Grampus griseus
por: Senevirathna, Jayan D.M., et al.
Publicado: (2023)

Micro-size plankton abundance and assemblages in the western North Pacific Subtropical Gyre under microscopic observation
por: Kodama, Taketoshi, et al.
Publicado: (2021)

Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton
por: Makita, Yuko, et al.
Publicado: (2021)

Author Correction: Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton
por: Makita, Yuko, et al.
Publicado: (2021)

Draft Genome Sequence of Aeromonas hydrophila Strain Ae34, Isolated from a Septicemic and Moribund Koi Carp (Cyprinus carpio koi), a Freshwater Aquarium Fish
por: Jagoda, S. S. S. De S., et al.
Publicado: (2014)

Evolution of the myosin heavy chain gene MYH14 and its intronic microRNA miR-499: muscle-specific miR-499 expression persists in the absence of the ancestral host gene
por: Bhuiyan, Sharmin Siddique, et al.
Publicado: (2013)

Comparison of Sulphate-reducing Bacterial Communities in Japanese Fish Farm Sediments with Different Levels of Organic Enrichment
por: Kondo, Ryuji, et al.
Publicado: (2012)

Distribution of Ammonia-Oxidizing Archaea and Bacteria in the Surface Sediments of Matsushima Bay in Relation to Environmental Variables
por: Sakami, Tomoko
Publicado: (2012)

High-Throughput Sequencing of the Expressed Torafugu (Takifugu rubripes) Antibody Sequences Distinguishes IgM and IgT Repertoires and Reveals Evidence of Convergent Evolution
por: Fu, Xi, et al.
Publicado: (2018)

Construction of a chromosome-level Japanese stickleback species genome using ultra-dense linkage analysis with single-cell sperm sequencing
por: Yoshitake, Kazutoshi, et al.
Publicado: (2022)

Complete genome sequence of Edwardsiella sp. NBRC12716 isolated in 1962 from the liver of diseased eel
por: Lanza, Andre, et al.
Publicado: (2023)

The complete mitochondrial genome of Spurilla braziliana MacFarland 1909 (Nudibranchia, Aeolidiidae)
por: Mizobata, Hideaki, et al.
Publicado: (2023)

Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
por: Kurokochi, Hiroyuki, et al.
Publicado: (2023)

Deep sequencing, profiling and detailed annotation of microRNAs in Takifugu rubripes
por: Wongwarangkana, Chaninya, et al.
Publicado: (2015)

Challenges and Opportunities of Airborne Metagenomics
por: Behzad, Hayedeh, et al.
Publicado: (2015)

Deep Sequencing of ESTs from Nacreous and Prismatic Layer Producing Tissues and a Screen for Novel Shell Formation-Related Genes in the Pearl Oyster
por: Kinoshita, Shigeharu, et al.
Publicado: (2011)

Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics
por: Kobiyama, Atsushi, et al.
Publicado: (2021)

Draft Genome Sequence of Thermoanaerobacterium saccharolyticum Strain NTOU1, a Thermophilic Bacterium Isolated from Marine Shallow Hydrothermal Vents
por: Tan, Engkong, et al.
Publicado: (2014)

Dramatic improvement in genome assembly achieved using doubled-haploid genomes
por: Zhang, Hong, et al.
Publicado: (2014)

Lactomycins A–C, Dephosphorylated Phoslactomycin Derivatives That Inhibit Cathepsin B, from the Marine-Derived Streptomyces sp. ACT232
por: Sun, Yi, et al.
Publicado: (2018)

Marine Metagenome as A Resource for Novel Enzymes
por: Alma’abadi, Amani D., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_53egob7u5pbgpd7kkcrpg05k20