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Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective

It is not controversial that study design considerations and challenges must be addressed when investigating the linkage between single omic measurements and human phenotypes. It follows that such considerations are just as critical, if not more so, in the context of multi-omic studies. In this revi...

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Autores principales: Chu, Su H., Huang, Mengna, Kelly, Rachel S., Benedetti, Elisa, Siddiqui, Jalal K., Zeleznik, Oana A., Pereira, Alexandre, Herrington, David, Wheelock, Craig E., Krumsiek, Jan, McGeachie, Michael, Moore, Steven C., Kraft, Peter, Mathé, Ewy, Lasky-Su, Jessica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6630728/
https://www.ncbi.nlm.nih.gov/pubmed/31216675
http://dx.doi.org/10.3390/metabo9060117
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author Chu, Su H.
Huang, Mengna
Kelly, Rachel S.
Benedetti, Elisa
Siddiqui, Jalal K.
Zeleznik, Oana A.
Pereira, Alexandre
Herrington, David
Wheelock, Craig E.
Krumsiek, Jan
McGeachie, Michael
Moore, Steven C.
Kraft, Peter
Mathé, Ewy
Lasky-Su, Jessica
author_facet Chu, Su H.
Huang, Mengna
Kelly, Rachel S.
Benedetti, Elisa
Siddiqui, Jalal K.
Zeleznik, Oana A.
Pereira, Alexandre
Herrington, David
Wheelock, Craig E.
Krumsiek, Jan
McGeachie, Michael
Moore, Steven C.
Kraft, Peter
Mathé, Ewy
Lasky-Su, Jessica
author_sort Chu, Su H.
collection PubMed
description It is not controversial that study design considerations and challenges must be addressed when investigating the linkage between single omic measurements and human phenotypes. It follows that such considerations are just as critical, if not more so, in the context of multi-omic studies. In this review, we discuss (1) epidemiologic principles of study design, including selection of biospecimen source(s) and the implications of the timing of sample collection, in the context of a multi-omic investigation, and (2) the strengths and limitations of various techniques of data integration across multi-omic data types that may arise in population-based studies utilizing metabolomic data.
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spelling pubmed-66307282019-08-19 Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective Chu, Su H. Huang, Mengna Kelly, Rachel S. Benedetti, Elisa Siddiqui, Jalal K. Zeleznik, Oana A. Pereira, Alexandre Herrington, David Wheelock, Craig E. Krumsiek, Jan McGeachie, Michael Moore, Steven C. Kraft, Peter Mathé, Ewy Lasky-Su, Jessica Metabolites Review It is not controversial that study design considerations and challenges must be addressed when investigating the linkage between single omic measurements and human phenotypes. It follows that such considerations are just as critical, if not more so, in the context of multi-omic studies. In this review, we discuss (1) epidemiologic principles of study design, including selection of biospecimen source(s) and the implications of the timing of sample collection, in the context of a multi-omic investigation, and (2) the strengths and limitations of various techniques of data integration across multi-omic data types that may arise in population-based studies utilizing metabolomic data. MDPI 2019-06-18 /pmc/articles/PMC6630728/ /pubmed/31216675 http://dx.doi.org/10.3390/metabo9060117 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Chu, Su H.
Huang, Mengna
Kelly, Rachel S.
Benedetti, Elisa
Siddiqui, Jalal K.
Zeleznik, Oana A.
Pereira, Alexandre
Herrington, David
Wheelock, Craig E.
Krumsiek, Jan
McGeachie, Michael
Moore, Steven C.
Kraft, Peter
Mathé, Ewy
Lasky-Su, Jessica
Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
title Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
title_full Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
title_fullStr Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
title_full_unstemmed Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
title_short Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
title_sort integration of metabolomic and other omics data in population-based study designs: an epidemiological perspective
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6630728/
https://www.ncbi.nlm.nih.gov/pubmed/31216675
http://dx.doi.org/10.3390/metabo9060117
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