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Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer
The behavior of a polymer in a passive crowded medium or in a very dilute active bath has been well studied, while a polymer immersed in an environment featured by both crowding and activity remains an open problem. In this paper, a systematic Langevin simulation is performed to investigate the conf...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6631676/ https://www.ncbi.nlm.nih.gov/pubmed/31185626 http://dx.doi.org/10.3390/polym11061021 |
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author | Cao, Xiuli Zhang, Bingjie Zhao, Nanrong |
author_facet | Cao, Xiuli Zhang, Bingjie Zhao, Nanrong |
author_sort | Cao, Xiuli |
collection | PubMed |
description | The behavior of a polymer in a passive crowded medium or in a very dilute active bath has been well studied, while a polymer immersed in an environment featured by both crowding and activity remains an open problem. In this paper, a systematic Langevin simulation is performed to investigate the conformational change of a semi-flexible chain in a concentrated solution packed with spherical active crowders. A very novel shrinkage-to-swelling transition is observed for a polymer with small rigidity. The underlying phase diagram is constructed in the parameter space of active force and crowder size. Moreover, the variation of the polymer gyration radius demonstrates a non-monotonic dependence on the dynamical persistence length of the active particle. Lastly, the activity-crowding coupling effect in different crowder size baths is clarified. In the case of small crowders, activity strengthens the crowding-induced shrinkage to the chain. As crowder size increases, activity turns out to be a contrasting factor to crowding, resulting in a competitive shrinkage and swelling. In the large size situation, the swelling effect arising from activity eventually becomes dominant. The present study provides a deeper understanding of the unusual behavior of a semi-flexible polymer in an active and crowded medium, associated with the nontrivial activity-crowding coupling and the cooperative crowder size effect. |
format | Online Article Text |
id | pubmed-6631676 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-66316762019-08-19 Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer Cao, Xiuli Zhang, Bingjie Zhao, Nanrong Polymers (Basel) Article The behavior of a polymer in a passive crowded medium or in a very dilute active bath has been well studied, while a polymer immersed in an environment featured by both crowding and activity remains an open problem. In this paper, a systematic Langevin simulation is performed to investigate the conformational change of a semi-flexible chain in a concentrated solution packed with spherical active crowders. A very novel shrinkage-to-swelling transition is observed for a polymer with small rigidity. The underlying phase diagram is constructed in the parameter space of active force and crowder size. Moreover, the variation of the polymer gyration radius demonstrates a non-monotonic dependence on the dynamical persistence length of the active particle. Lastly, the activity-crowding coupling effect in different crowder size baths is clarified. In the case of small crowders, activity strengthens the crowding-induced shrinkage to the chain. As crowder size increases, activity turns out to be a contrasting factor to crowding, resulting in a competitive shrinkage and swelling. In the large size situation, the swelling effect arising from activity eventually becomes dominant. The present study provides a deeper understanding of the unusual behavior of a semi-flexible polymer in an active and crowded medium, associated with the nontrivial activity-crowding coupling and the cooperative crowder size effect. MDPI 2019-06-10 /pmc/articles/PMC6631676/ /pubmed/31185626 http://dx.doi.org/10.3390/polym11061021 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cao, Xiuli Zhang, Bingjie Zhao, Nanrong Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer |
title | Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer |
title_full | Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer |
title_fullStr | Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer |
title_full_unstemmed | Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer |
title_short | Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer |
title_sort | crowding-activity coupling effect on conformational change of a semi-flexible polymer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6631676/ https://www.ncbi.nlm.nih.gov/pubmed/31185626 http://dx.doi.org/10.3390/polym11061021 |
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