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A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus
PREMISE: Herbarium specimens have been used to detect climate‐induced shifts in flowering time by using the day of year of collection (DOY) as a proxy for first or peak flowering date. Variation among herbarium sheets in their phenological status, however, undermines the assumption that DOY accurate...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6636619/ https://www.ncbi.nlm.nih.gov/pubmed/31346508 http://dx.doi.org/10.1002/aps3.11276 |
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author | Love, Natalie L. Rossington Park, Isaac W. Mazer, Susan J. |
author_facet | Love, Natalie L. Rossington Park, Isaac W. Mazer, Susan J. |
author_sort | Love, Natalie L. Rossington |
collection | PubMed |
description | PREMISE: Herbarium specimens have been used to detect climate‐induced shifts in flowering time by using the day of year of collection (DOY) as a proxy for first or peak flowering date. Variation among herbarium sheets in their phenological status, however, undermines the assumption that DOY accurately represents any particular phenophase. Ignoring this variation can reduce the explanatory power of pheno‐climatic models (PCMs) designed to predict the effects of climate on flowering date. METHODS: Here we present a protocol for the phenological scoring of imaged herbarium specimens using an ImageJ plugin, and we introduce a quantitative metric of a specimen's phenological status, the phenological index (PI), which we use in PCMs to control for phenological variation among specimens of Streptanthus tortuosus (Brassicaceeae) when testing for the effects of climate on DOY. We demonstrate that including PI as an independent variable improves model fit. RESULTS: Including PI in PCMs increased the model R (2) relative to PCMs that excluded PI; regression coefficients for climatic parameters, however, remained constant. DISCUSSION: Our protocol provides a simple, quantitative phenological metric for any observed plant. Including PI in PCMs increases R (2) and enables predictions of the DOY of any phenophase under any specified climatic conditions. |
format | Online Article Text |
id | pubmed-6636619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66366192019-07-25 A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus Love, Natalie L. Rossington Park, Isaac W. Mazer, Susan J. Appl Plant Sci Application Article PREMISE: Herbarium specimens have been used to detect climate‐induced shifts in flowering time by using the day of year of collection (DOY) as a proxy for first or peak flowering date. Variation among herbarium sheets in their phenological status, however, undermines the assumption that DOY accurately represents any particular phenophase. Ignoring this variation can reduce the explanatory power of pheno‐climatic models (PCMs) designed to predict the effects of climate on flowering date. METHODS: Here we present a protocol for the phenological scoring of imaged herbarium specimens using an ImageJ plugin, and we introduce a quantitative metric of a specimen's phenological status, the phenological index (PI), which we use in PCMs to control for phenological variation among specimens of Streptanthus tortuosus (Brassicaceeae) when testing for the effects of climate on DOY. We demonstrate that including PI as an independent variable improves model fit. RESULTS: Including PI in PCMs increased the model R (2) relative to PCMs that excluded PI; regression coefficients for climatic parameters, however, remained constant. DISCUSSION: Our protocol provides a simple, quantitative phenological metric for any observed plant. Including PI in PCMs increases R (2) and enables predictions of the DOY of any phenophase under any specified climatic conditions. John Wiley and Sons Inc. 2019-07-12 /pmc/articles/PMC6636619/ /pubmed/31346508 http://dx.doi.org/10.1002/aps3.11276 Text en © 2019 Love et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Application Article Love, Natalie L. Rossington Park, Isaac W. Mazer, Susan J. A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus |
title | A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus
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title_full | A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus
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title_fullStr | A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus
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title_full_unstemmed | A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus
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title_short | A new phenological metric for use in pheno‐climatic models: A case study using herbarium specimens of Streptanthus tortuosus
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title_sort | new phenological metric for use in pheno‐climatic models: a case study using herbarium specimens of streptanthus tortuosus |
topic | Application Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6636619/ https://www.ncbi.nlm.nih.gov/pubmed/31346508 http://dx.doi.org/10.1002/aps3.11276 |
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