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Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes
The hypothesis of data probability density distributions has many effects on the design of a new statistical method. Based on the analysis of a group of real gene expression profiles, this study reveal that the primary density distributions of the real profiles are normal/log-normal and t distributi...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6636747/ https://www.ncbi.nlm.nih.gov/pubmed/31314810 http://dx.doi.org/10.1371/journal.pone.0219551 |
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author | Liu, Han-Ming Yang, Dan Liu, Zhao-Fa Hu, Sheng-Zhou Yan, Shen-Hai He, Xian-Wen |
author_facet | Liu, Han-Ming Yang, Dan Liu, Zhao-Fa Hu, Sheng-Zhou Yan, Shen-Hai He, Xian-Wen |
author_sort | Liu, Han-Ming |
collection | PubMed |
description | The hypothesis of data probability density distributions has many effects on the design of a new statistical method. Based on the analysis of a group of real gene expression profiles, this study reveal that the primary density distributions of the real profiles are normal/log-normal and t distributions, accounting for 80% and 19% respectively. According to these distributions, we generated a series of simulation data to make a more comprehensive assessment for a novel statistical method, maximal information coefficient (MIC). The results show that MIC is not only in the top tier in the overall performance of identifying differentially expressed genes, but also exhibits a better adaptability and an excellent noise immunity in comparison with the existing methods. |
format | Online Article Text |
id | pubmed-6636747 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-66367472019-07-25 Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes Liu, Han-Ming Yang, Dan Liu, Zhao-Fa Hu, Sheng-Zhou Yan, Shen-Hai He, Xian-Wen PLoS One Research Article The hypothesis of data probability density distributions has many effects on the design of a new statistical method. Based on the analysis of a group of real gene expression profiles, this study reveal that the primary density distributions of the real profiles are normal/log-normal and t distributions, accounting for 80% and 19% respectively. According to these distributions, we generated a series of simulation data to make a more comprehensive assessment for a novel statistical method, maximal information coefficient (MIC). The results show that MIC is not only in the top tier in the overall performance of identifying differentially expressed genes, but also exhibits a better adaptability and an excellent noise immunity in comparison with the existing methods. Public Library of Science 2019-07-17 /pmc/articles/PMC6636747/ /pubmed/31314810 http://dx.doi.org/10.1371/journal.pone.0219551 Text en © 2019 Liu et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Liu, Han-Ming Yang, Dan Liu, Zhao-Fa Hu, Sheng-Zhou Yan, Shen-Hai He, Xian-Wen Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
title | Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
title_full | Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
title_fullStr | Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
title_full_unstemmed | Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
title_short | Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
title_sort | density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6636747/ https://www.ncbi.nlm.nih.gov/pubmed/31314810 http://dx.doi.org/10.1371/journal.pone.0219551 |
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