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Pooled library screening with multiplexed Cpf1 library
Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed, high-throughput screening strategy that minimizes library size without sacrificing gene targeting efficiency. We demonstrated that AsCpf1 can be used for functional genomics screenings and that an AsCpf1-base...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637147/ https://www.ncbi.nlm.nih.gov/pubmed/31316073 http://dx.doi.org/10.1038/s41467-019-10963-x |
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author | Liu, Jintan Srinivasan, Sanjana Li, Chieh-Yuan Ho, I-Lin Rose, Johnathon Shaheen, MennatAllah Wang, Gang Yao, Wantong Deem, Angela Bristow, Chris Hart, Traver Draetta, Giulio |
author_facet | Liu, Jintan Srinivasan, Sanjana Li, Chieh-Yuan Ho, I-Lin Rose, Johnathon Shaheen, MennatAllah Wang, Gang Yao, Wantong Deem, Angela Bristow, Chris Hart, Traver Draetta, Giulio |
author_sort | Liu, Jintan |
collection | PubMed |
description | Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed, high-throughput screening strategy that minimizes library size without sacrificing gene targeting efficiency. We demonstrated that AsCpf1 can be used for functional genomics screenings and that an AsCpf1-based multiplexed library performs similarly as compared to currently available monocistronic CRISPR/Cas9 libraries, with only one vector required for each gene. We construct the smallest whole-genome CRISPR knock-out library, Mini-human, for the human genome (n = 17,032 constructs targeting 16,977 protein-coding genes), which performs favorably compared to conventional Cas9 libraries. |
format | Online Article Text |
id | pubmed-6637147 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66371472019-07-19 Pooled library screening with multiplexed Cpf1 library Liu, Jintan Srinivasan, Sanjana Li, Chieh-Yuan Ho, I-Lin Rose, Johnathon Shaheen, MennatAllah Wang, Gang Yao, Wantong Deem, Angela Bristow, Chris Hart, Traver Draetta, Giulio Nat Commun Article Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed, high-throughput screening strategy that minimizes library size without sacrificing gene targeting efficiency. We demonstrated that AsCpf1 can be used for functional genomics screenings and that an AsCpf1-based multiplexed library performs similarly as compared to currently available monocistronic CRISPR/Cas9 libraries, with only one vector required for each gene. We construct the smallest whole-genome CRISPR knock-out library, Mini-human, for the human genome (n = 17,032 constructs targeting 16,977 protein-coding genes), which performs favorably compared to conventional Cas9 libraries. Nature Publishing Group UK 2019-07-17 /pmc/articles/PMC6637147/ /pubmed/31316073 http://dx.doi.org/10.1038/s41467-019-10963-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Liu, Jintan Srinivasan, Sanjana Li, Chieh-Yuan Ho, I-Lin Rose, Johnathon Shaheen, MennatAllah Wang, Gang Yao, Wantong Deem, Angela Bristow, Chris Hart, Traver Draetta, Giulio Pooled library screening with multiplexed Cpf1 library |
title | Pooled library screening with multiplexed Cpf1 library |
title_full | Pooled library screening with multiplexed Cpf1 library |
title_fullStr | Pooled library screening with multiplexed Cpf1 library |
title_full_unstemmed | Pooled library screening with multiplexed Cpf1 library |
title_short | Pooled library screening with multiplexed Cpf1 library |
title_sort | pooled library screening with multiplexed cpf1 library |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637147/ https://www.ncbi.nlm.nih.gov/pubmed/31316073 http://dx.doi.org/10.1038/s41467-019-10963-x |
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