Cargando…

Pooled library screening with multiplexed Cpf1 library

Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed, high-throughput screening strategy that minimizes library size without sacrificing gene targeting efficiency. We demonstrated that AsCpf1 can be used for functional genomics screenings and that an AsCpf1-base...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Jintan, Srinivasan, Sanjana, Li, Chieh-Yuan, Ho, I-Lin, Rose, Johnathon, Shaheen, MennatAllah, Wang, Gang, Yao, Wantong, Deem, Angela, Bristow, Chris, Hart, Traver, Draetta, Giulio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637147/
https://www.ncbi.nlm.nih.gov/pubmed/31316073
http://dx.doi.org/10.1038/s41467-019-10963-x
_version_ 1783436183211081728
author Liu, Jintan
Srinivasan, Sanjana
Li, Chieh-Yuan
Ho, I-Lin
Rose, Johnathon
Shaheen, MennatAllah
Wang, Gang
Yao, Wantong
Deem, Angela
Bristow, Chris
Hart, Traver
Draetta, Giulio
author_facet Liu, Jintan
Srinivasan, Sanjana
Li, Chieh-Yuan
Ho, I-Lin
Rose, Johnathon
Shaheen, MennatAllah
Wang, Gang
Yao, Wantong
Deem, Angela
Bristow, Chris
Hart, Traver
Draetta, Giulio
author_sort Liu, Jintan
collection PubMed
description Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed, high-throughput screening strategy that minimizes library size without sacrificing gene targeting efficiency. We demonstrated that AsCpf1 can be used for functional genomics screenings and that an AsCpf1-based multiplexed library performs similarly as compared to currently available monocistronic CRISPR/Cas9 libraries, with only one vector required for each gene. We construct the smallest whole-genome CRISPR knock-out library, Mini-human, for the human genome (n = 17,032 constructs targeting 16,977 protein-coding genes), which performs favorably compared to conventional Cas9 libraries.
format Online
Article
Text
id pubmed-6637147
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-66371472019-07-19 Pooled library screening with multiplexed Cpf1 library Liu, Jintan Srinivasan, Sanjana Li, Chieh-Yuan Ho, I-Lin Rose, Johnathon Shaheen, MennatAllah Wang, Gang Yao, Wantong Deem, Angela Bristow, Chris Hart, Traver Draetta, Giulio Nat Commun Article Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed, high-throughput screening strategy that minimizes library size without sacrificing gene targeting efficiency. We demonstrated that AsCpf1 can be used for functional genomics screenings and that an AsCpf1-based multiplexed library performs similarly as compared to currently available monocistronic CRISPR/Cas9 libraries, with only one vector required for each gene. We construct the smallest whole-genome CRISPR knock-out library, Mini-human, for the human genome (n = 17,032 constructs targeting 16,977 protein-coding genes), which performs favorably compared to conventional Cas9 libraries. Nature Publishing Group UK 2019-07-17 /pmc/articles/PMC6637147/ /pubmed/31316073 http://dx.doi.org/10.1038/s41467-019-10963-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liu, Jintan
Srinivasan, Sanjana
Li, Chieh-Yuan
Ho, I-Lin
Rose, Johnathon
Shaheen, MennatAllah
Wang, Gang
Yao, Wantong
Deem, Angela
Bristow, Chris
Hart, Traver
Draetta, Giulio
Pooled library screening with multiplexed Cpf1 library
title Pooled library screening with multiplexed Cpf1 library
title_full Pooled library screening with multiplexed Cpf1 library
title_fullStr Pooled library screening with multiplexed Cpf1 library
title_full_unstemmed Pooled library screening with multiplexed Cpf1 library
title_short Pooled library screening with multiplexed Cpf1 library
title_sort pooled library screening with multiplexed cpf1 library
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637147/
https://www.ncbi.nlm.nih.gov/pubmed/31316073
http://dx.doi.org/10.1038/s41467-019-10963-x
work_keys_str_mv AT liujintan pooledlibraryscreeningwithmultiplexedcpf1library
AT srinivasansanjana pooledlibraryscreeningwithmultiplexedcpf1library
AT lichiehyuan pooledlibraryscreeningwithmultiplexedcpf1library
AT hoilin pooledlibraryscreeningwithmultiplexedcpf1library
AT rosejohnathon pooledlibraryscreeningwithmultiplexedcpf1library
AT shaheenmennatallah pooledlibraryscreeningwithmultiplexedcpf1library
AT wanggang pooledlibraryscreeningwithmultiplexedcpf1library
AT yaowantong pooledlibraryscreeningwithmultiplexedcpf1library
AT deemangela pooledlibraryscreeningwithmultiplexedcpf1library
AT bristowchris pooledlibraryscreeningwithmultiplexedcpf1library
AT harttraver pooledlibraryscreeningwithmultiplexedcpf1library
AT draettagiulio pooledlibraryscreeningwithmultiplexedcpf1library