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Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data
Measurement errors commonly occur in 24-h hormonal data and may affect the outcomes of such studies. Measurement errors often appear as outliers in such data sets; however, no well-established method is available for their automatic detection. In this study, we aimed to compare performances of diffe...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637814/ https://www.ncbi.nlm.nih.gov/pubmed/31187683 http://dx.doi.org/10.1177/0748730419850917 |
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author | van der Spoel, Evie Choi, Jungyeon Roelfsema, Ferdinand le Cessie, Saskia van Heemst, Diana Dekkers, Olaf M. |
author_facet | van der Spoel, Evie Choi, Jungyeon Roelfsema, Ferdinand le Cessie, Saskia van Heemst, Diana Dekkers, Olaf M. |
author_sort | van der Spoel, Evie |
collection | PubMed |
description | Measurement errors commonly occur in 24-h hormonal data and may affect the outcomes of such studies. Measurement errors often appear as outliers in such data sets; however, no well-established method is available for their automatic detection. In this study, we aimed to compare performances of different methods for outlier detection in hormonal serial data. Hormones (glucose, insulin, thyroid-stimulating hormone, cortisol, and growth hormone) were measured in blood sampled every 10 min for 24 h in 38 participants of the Leiden Longevity Study. Four methods for detecting outliers were compared: (1) eyeballing, (2) Tukey’s fences, (3) stepwise approach, and (4) the expectation-maximization (EM) algorithm. Eyeballing detects outliers based on experts’ knowledge, and the stepwise approach incorporates physiological knowledge with a statistical algorithm. Tukey’s fences and the EM algorithm are data-driven methods, using interquartile range and a mathematical algorithm to identify the underlying distribution, respectively. The performance of the methods was evaluated based on the number of outliers detected and the change in statistical outcomes after removing detected outliers. Eyeballing resulted in the lowest number of outliers detected (1.0% of all data points), followed by Tukey’s fences (2.3%), the stepwise approach (2.7%), and the EM algorithm (11.0%). In all methods, the mean hormone levels did not change materially after removing outliers. However, their minima were affected by outlier removal. Although removing outliers affected the correlation between glucose and insulin on the individual level, when averaged over all participants, none of the 4 methods influenced the correlation. Based on our results, the EM algorithm is not recommended given the high number of outliers detected, even where data points are physiologically plausible. Since Tukey’s fences is not suitable for all types of data and eyeballing is time-consuming, we recommend the stepwise approach for outlier detection, which combines physiological knowledge and an automated process. |
format | Online Article Text |
id | pubmed-6637814 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-66378142019-08-22 Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data van der Spoel, Evie Choi, Jungyeon Roelfsema, Ferdinand le Cessie, Saskia van Heemst, Diana Dekkers, Olaf M. J Biol Rhythms JBR Perspectives on Data Analysis Measurement errors commonly occur in 24-h hormonal data and may affect the outcomes of such studies. Measurement errors often appear as outliers in such data sets; however, no well-established method is available for their automatic detection. In this study, we aimed to compare performances of different methods for outlier detection in hormonal serial data. Hormones (glucose, insulin, thyroid-stimulating hormone, cortisol, and growth hormone) were measured in blood sampled every 10 min for 24 h in 38 participants of the Leiden Longevity Study. Four methods for detecting outliers were compared: (1) eyeballing, (2) Tukey’s fences, (3) stepwise approach, and (4) the expectation-maximization (EM) algorithm. Eyeballing detects outliers based on experts’ knowledge, and the stepwise approach incorporates physiological knowledge with a statistical algorithm. Tukey’s fences and the EM algorithm are data-driven methods, using interquartile range and a mathematical algorithm to identify the underlying distribution, respectively. The performance of the methods was evaluated based on the number of outliers detected and the change in statistical outcomes after removing detected outliers. Eyeballing resulted in the lowest number of outliers detected (1.0% of all data points), followed by Tukey’s fences (2.3%), the stepwise approach (2.7%), and the EM algorithm (11.0%). In all methods, the mean hormone levels did not change materially after removing outliers. However, their minima were affected by outlier removal. Although removing outliers affected the correlation between glucose and insulin on the individual level, when averaged over all participants, none of the 4 methods influenced the correlation. Based on our results, the EM algorithm is not recommended given the high number of outliers detected, even where data points are physiologically plausible. Since Tukey’s fences is not suitable for all types of data and eyeballing is time-consuming, we recommend the stepwise approach for outlier detection, which combines physiological knowledge and an automated process. SAGE Publications 2019-06-12 2019-08 /pmc/articles/PMC6637814/ /pubmed/31187683 http://dx.doi.org/10.1177/0748730419850917 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution 4.0 License (http://www.creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | JBR Perspectives on Data Analysis van der Spoel, Evie Choi, Jungyeon Roelfsema, Ferdinand le Cessie, Saskia van Heemst, Diana Dekkers, Olaf M. Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data |
title | Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data |
title_full | Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data |
title_fullStr | Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data |
title_full_unstemmed | Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data |
title_short | Comparing Methods for Measurement Error Detection in Serial 24-h Hormonal Data |
title_sort | comparing methods for measurement error detection in serial 24-h hormonal data |
topic | JBR Perspectives on Data Analysis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637814/ https://www.ncbi.nlm.nih.gov/pubmed/31187683 http://dx.doi.org/10.1177/0748730419850917 |
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