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The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis

Asparagus bean (Vigna. unguiculata ssp. sesquipedialis), known for its very long and tender green pods, is an important vegetable crop broadly grown in the developing Asian countries. In this study, we reported a 632.8 Mb assembly (549.81 Mb non-N size) of asparagus bean based on the whole genome sh...

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Autores principales: Xia, Qiuju, Pan, Lei, Zhang, Ru, Ni, Xuemei, Wang, Yangzi, Dong, Xiao, Gao, Yun, Zhang, Zhe, Kui, Ling, Li, Yong, Wang, Wen, Yang, Huanming, Chen, Chanyou, Miao, Jianhua, Chen, Wei, Dong, Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638192/
https://www.ncbi.nlm.nih.gov/pubmed/31316072
http://dx.doi.org/10.1038/s41597-019-0130-6
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author Xia, Qiuju
Pan, Lei
Zhang, Ru
Ni, Xuemei
Wang, Yangzi
Dong, Xiao
Gao, Yun
Zhang, Zhe
Kui, Ling
Li, Yong
Wang, Wen
Yang, Huanming
Chen, Chanyou
Miao, Jianhua
Chen, Wei
Dong, Yang
author_facet Xia, Qiuju
Pan, Lei
Zhang, Ru
Ni, Xuemei
Wang, Yangzi
Dong, Xiao
Gao, Yun
Zhang, Zhe
Kui, Ling
Li, Yong
Wang, Wen
Yang, Huanming
Chen, Chanyou
Miao, Jianhua
Chen, Wei
Dong, Yang
author_sort Xia, Qiuju
collection PubMed
description Asparagus bean (Vigna. unguiculata ssp. sesquipedialis), known for its very long and tender green pods, is an important vegetable crop broadly grown in the developing Asian countries. In this study, we reported a 632.8 Mb assembly (549.81 Mb non-N size) of asparagus bean based on the whole genome shotgun sequencing strategy. We also generated a linkage map for asparagus bean, which helped anchor 94.42% of the scaffolds into 11 pseudo-chromosomes. A total of 42,609 protein-coding genes and 3,579 non-protein-coding genes were predicted from the assembly. Taken together, these genomic resources of asparagus bean will help develop a pan-genome of V. unguiculata and facilitate the investigation of economically valuable traits in this species, so that the cultivation of this plant would help combat the protein and energy malnutrition in the developing world.
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spelling pubmed-66381922019-07-19 The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis Xia, Qiuju Pan, Lei Zhang, Ru Ni, Xuemei Wang, Yangzi Dong, Xiao Gao, Yun Zhang, Zhe Kui, Ling Li, Yong Wang, Wen Yang, Huanming Chen, Chanyou Miao, Jianhua Chen, Wei Dong, Yang Sci Data Data Descriptor Asparagus bean (Vigna. unguiculata ssp. sesquipedialis), known for its very long and tender green pods, is an important vegetable crop broadly grown in the developing Asian countries. In this study, we reported a 632.8 Mb assembly (549.81 Mb non-N size) of asparagus bean based on the whole genome shotgun sequencing strategy. We also generated a linkage map for asparagus bean, which helped anchor 94.42% of the scaffolds into 11 pseudo-chromosomes. A total of 42,609 protein-coding genes and 3,579 non-protein-coding genes were predicted from the assembly. Taken together, these genomic resources of asparagus bean will help develop a pan-genome of V. unguiculata and facilitate the investigation of economically valuable traits in this species, so that the cultivation of this plant would help combat the protein and energy malnutrition in the developing world. Nature Publishing Group UK 2019-07-17 /pmc/articles/PMC6638192/ /pubmed/31316072 http://dx.doi.org/10.1038/s41597-019-0130-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Xia, Qiuju
Pan, Lei
Zhang, Ru
Ni, Xuemei
Wang, Yangzi
Dong, Xiao
Gao, Yun
Zhang, Zhe
Kui, Ling
Li, Yong
Wang, Wen
Yang, Huanming
Chen, Chanyou
Miao, Jianhua
Chen, Wei
Dong, Yang
The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
title The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
title_full The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
title_fullStr The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
title_full_unstemmed The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
title_short The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
title_sort genome assembly of asparagus bean, vigna unguiculata ssp. sesquipedialis
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638192/
https://www.ncbi.nlm.nih.gov/pubmed/31316072
http://dx.doi.org/10.1038/s41597-019-0130-6
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