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Signal integration and information transfer in an allosterically regulated network

A biological reaction network may serve multiple purposes, processing more than one input and impacting downstream processes via more than one output. These networks operate in a dynamic cellular environment in which the levels of network components may change within cells and across cells. Recent e...

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Autores principales: Shockley, Erin M., Rouzer, Carol A., Marnett, Lawrence J., Deeds, Eric J., Lopez, Carlos F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6639376/
https://www.ncbi.nlm.nih.gov/pubmed/31341635
http://dx.doi.org/10.1038/s41540-019-0100-9
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author Shockley, Erin M.
Rouzer, Carol A.
Marnett, Lawrence J.
Deeds, Eric J.
Lopez, Carlos F.
author_facet Shockley, Erin M.
Rouzer, Carol A.
Marnett, Lawrence J.
Deeds, Eric J.
Lopez, Carlos F.
author_sort Shockley, Erin M.
collection PubMed
description A biological reaction network may serve multiple purposes, processing more than one input and impacting downstream processes via more than one output. These networks operate in a dynamic cellular environment in which the levels of network components may change within cells and across cells. Recent evidence suggests that protein concentration variability could explain cell fate decisions. However, systems with multiple inputs, multiple outputs, and changing input concentrations have not been studied in detail due to their complexity. Here, we take a systems biochemistry approach, combining physiochemical modeling and information theory, to investigate how cyclooxygenase-2 (COX-2) processes simultaneous input signals within a complex interaction network. We find that changes in input levels affect the amount of information transmitted by the network, as does the correlation between those inputs. This, and the allosteric regulation of COX-2 by its substrates, allows it to act as a signal integrator that is most sensitive to changes in relative input levels.
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spelling pubmed-66393762019-07-24 Signal integration and information transfer in an allosterically regulated network Shockley, Erin M. Rouzer, Carol A. Marnett, Lawrence J. Deeds, Eric J. Lopez, Carlos F. NPJ Syst Biol Appl Article A biological reaction network may serve multiple purposes, processing more than one input and impacting downstream processes via more than one output. These networks operate in a dynamic cellular environment in which the levels of network components may change within cells and across cells. Recent evidence suggests that protein concentration variability could explain cell fate decisions. However, systems with multiple inputs, multiple outputs, and changing input concentrations have not been studied in detail due to their complexity. Here, we take a systems biochemistry approach, combining physiochemical modeling and information theory, to investigate how cyclooxygenase-2 (COX-2) processes simultaneous input signals within a complex interaction network. We find that changes in input levels affect the amount of information transmitted by the network, as does the correlation between those inputs. This, and the allosteric regulation of COX-2 by its substrates, allows it to act as a signal integrator that is most sensitive to changes in relative input levels. Nature Publishing Group UK 2019-07-18 /pmc/articles/PMC6639376/ /pubmed/31341635 http://dx.doi.org/10.1038/s41540-019-0100-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shockley, Erin M.
Rouzer, Carol A.
Marnett, Lawrence J.
Deeds, Eric J.
Lopez, Carlos F.
Signal integration and information transfer in an allosterically regulated network
title Signal integration and information transfer in an allosterically regulated network
title_full Signal integration and information transfer in an allosterically regulated network
title_fullStr Signal integration and information transfer in an allosterically regulated network
title_full_unstemmed Signal integration and information transfer in an allosterically regulated network
title_short Signal integration and information transfer in an allosterically regulated network
title_sort signal integration and information transfer in an allosterically regulated network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6639376/
https://www.ncbi.nlm.nih.gov/pubmed/31341635
http://dx.doi.org/10.1038/s41540-019-0100-9
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