T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, s...

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Autores principales: Carbone, Ignazio, White, James B., Miadlikowska, Jolanta, Arnold, A. Elizabeth, Miller, Mark A., Magain, Nicolas, U'Ren, Jana M., Lutzoni, François
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6639605/
https://www.ncbi.nlm.nih.gov/pubmed/31320426
http://dx.doi.org/10.1128/MRA.00328-19
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author Carbone, Ignazio
White, James B.
Miadlikowska, Jolanta
Arnold, A. Elizabeth
Miller, Mark A.
Magain, Nicolas
U'Ren, Jana M.
Lutzoni, François
author_facet Carbone, Ignazio
White, James B.
Miadlikowska, Jolanta
Arnold, A. Elizabeth
Miller, Mark A.
Magain, Nicolas
U'Ren, Jana M.
Lutzoni, François
author_sort Carbone, Ignazio
collection PubMed
description The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.
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spelling pubmed-66396052019-08-06 T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees Carbone, Ignazio White, James B. Miadlikowska, Jolanta Arnold, A. Elizabeth Miller, Mark A. Magain, Nicolas U'Ren, Jana M. Lutzoni, François Microbiol Resour Announc Databases and Software The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata. American Society for Microbiology 2019-07-18 /pmc/articles/PMC6639605/ /pubmed/31320426 http://dx.doi.org/10.1128/MRA.00328-19 Text en Copyright © 2019 Carbone et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Carbone, Ignazio
White, James B.
Miadlikowska, Jolanta
Arnold, A. Elizabeth
Miller, Mark A.
Magain, Nicolas
U'Ren, Jana M.
Lutzoni, François
T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
title T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
title_full T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
title_fullStr T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
title_full_unstemmed T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
title_short T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees
title_sort t-bas version 2.1: tree-based alignment selector toolkit for evolutionary placement of dna sequences and viewing alignments and specimen metadata on curated and custom trees
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6639605/
https://www.ncbi.nlm.nih.gov/pubmed/31320426
http://dx.doi.org/10.1128/MRA.00328-19
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