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Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department
BACKGROUND: Falls among older adults are both a common reason for presentation to the emergency department, and a major source of morbidity and mortality. It is critical to identify fall patients quickly and reliably during, and immediately after, emergency department encounters in order to deliver...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6647058/ https://www.ncbi.nlm.nih.gov/pubmed/31331322 http://dx.doi.org/10.1186/s12911-019-0843-7 |
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author | Patterson, Brian W. Jacobsohn, Gwen C. Shah, Manish N. Song, Yiqiang Maru, Apoorva Venkatesh, Arjun K. Zhong, Monica Taylor, Katherine Hamedani, Azita G. Mendonça, Eneida A. |
author_facet | Patterson, Brian W. Jacobsohn, Gwen C. Shah, Manish N. Song, Yiqiang Maru, Apoorva Venkatesh, Arjun K. Zhong, Monica Taylor, Katherine Hamedani, Azita G. Mendonça, Eneida A. |
author_sort | Patterson, Brian W. |
collection | PubMed |
description | BACKGROUND: Falls among older adults are both a common reason for presentation to the emergency department, and a major source of morbidity and mortality. It is critical to identify fall patients quickly and reliably during, and immediately after, emergency department encounters in order to deliver appropriate care and referrals. Unfortunately, falls are difficult to identify without manual chart review, a time intensive process infeasible for many applications including surveillance and quality reporting. Here we describe a pragmatic NLP approach to automating fall identification. METHODS: In this single center retrospective review, 500 emergency department provider notes from older adult patients (age 65 and older) were randomly selected for analysis. A simple, rules-based NLP algorithm for fall identification was developed and evaluated on a development set of 1084 notes, then compared with identification by consensus of trained abstractors blinded to NLP results. RESULTS: The NLP pipeline demonstrated a recall (sensitivity) of 95.8%, specificity of 97.4%, precision of 92.0%, and F1 score of 0.939 for identifying fall events within emergency physician visit notes, as compared to gold standard manual abstraction by human coders. CONCLUSIONS: Our pragmatic NLP algorithm was able to identify falls in ED notes with excellent precision and recall, comparable to that of more labor-intensive manual abstraction. This finding offers promise not just for improving research methods, but as a potential for identifying patients for targeted interventions, quality measure development and epidemiologic surveillance. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12911-019-0843-7) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6647058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-66470582019-07-31 Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department Patterson, Brian W. Jacobsohn, Gwen C. Shah, Manish N. Song, Yiqiang Maru, Apoorva Venkatesh, Arjun K. Zhong, Monica Taylor, Katherine Hamedani, Azita G. Mendonça, Eneida A. BMC Med Inform Decis Mak Research Article BACKGROUND: Falls among older adults are both a common reason for presentation to the emergency department, and a major source of morbidity and mortality. It is critical to identify fall patients quickly and reliably during, and immediately after, emergency department encounters in order to deliver appropriate care and referrals. Unfortunately, falls are difficult to identify without manual chart review, a time intensive process infeasible for many applications including surveillance and quality reporting. Here we describe a pragmatic NLP approach to automating fall identification. METHODS: In this single center retrospective review, 500 emergency department provider notes from older adult patients (age 65 and older) were randomly selected for analysis. A simple, rules-based NLP algorithm for fall identification was developed and evaluated on a development set of 1084 notes, then compared with identification by consensus of trained abstractors blinded to NLP results. RESULTS: The NLP pipeline demonstrated a recall (sensitivity) of 95.8%, specificity of 97.4%, precision of 92.0%, and F1 score of 0.939 for identifying fall events within emergency physician visit notes, as compared to gold standard manual abstraction by human coders. CONCLUSIONS: Our pragmatic NLP algorithm was able to identify falls in ED notes with excellent precision and recall, comparable to that of more labor-intensive manual abstraction. This finding offers promise not just for improving research methods, but as a potential for identifying patients for targeted interventions, quality measure development and epidemiologic surveillance. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12911-019-0843-7) contains supplementary material, which is available to authorized users. BioMed Central 2019-07-22 /pmc/articles/PMC6647058/ /pubmed/31331322 http://dx.doi.org/10.1186/s12911-019-0843-7 Text en © The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Patterson, Brian W. Jacobsohn, Gwen C. Shah, Manish N. Song, Yiqiang Maru, Apoorva Venkatesh, Arjun K. Zhong, Monica Taylor, Katherine Hamedani, Azita G. Mendonça, Eneida A. Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
title | Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
title_full | Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
title_fullStr | Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
title_full_unstemmed | Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
title_short | Development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
title_sort | development and validation of a pragmatic natural language processing approach to identifying falls in older adults in the emergency department |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6647058/ https://www.ncbi.nlm.nih.gov/pubmed/31331322 http://dx.doi.org/10.1186/s12911-019-0843-7 |
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