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Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data

[Image: see text] There is an increasing focus on the part of academic institutions, funding agencies, and publishers, if not researchers themselves, on preservation and sharing of research data. Motivations for sharing include research integrity, replicability, and reuse. One of the barriers to pub...

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Autores principales: Barba, Agustin, Dominguez, Santiago, Cobas, Carlos, Martinsen, David P., Romain, Charles, Rzepa, Henry S., Seoane, Felipe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2019
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648158/
https://www.ncbi.nlm.nih.gov/pubmed/31459544
http://dx.doi.org/10.1021/acsomega.8b03005
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author Barba, Agustin
Dominguez, Santiago
Cobas, Carlos
Martinsen, David P.
Romain, Charles
Rzepa, Henry S.
Seoane, Felipe
author_facet Barba, Agustin
Dominguez, Santiago
Cobas, Carlos
Martinsen, David P.
Romain, Charles
Rzepa, Henry S.
Seoane, Felipe
author_sort Barba, Agustin
collection PubMed
description [Image: see text] There is an increasing focus on the part of academic institutions, funding agencies, and publishers, if not researchers themselves, on preservation and sharing of research data. Motivations for sharing include research integrity, replicability, and reuse. One of the barriers to publishing data is the extra work involved in preparing data for publication once a journal article and its supporting information have been completed. In this work, a method is described to generate both human and machine-readable supporting information directly from the primary instrumental data files and to generate the metadata to ensure it is published in accordance with findable, accessible, interoperable, and reusable (FAIR) guidelines. Using this approach, both the human readable supporting information and the primary (raw) data can be submitted simultaneously with little extra effort. Although traditionally the data package would be sent to a journal publisher for publication alongside the article, the data package could also be published independently in an institutional FAIR data repository. Workflows are described that store the data packages and generate metadata appropriate for such a repository. The methods both to generate and to publish the data packages have been implemented for NMR data, but the concept is extensible to other types of spectroscopic data as well.
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spelling pubmed-66481582019-08-27 Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data Barba, Agustin Dominguez, Santiago Cobas, Carlos Martinsen, David P. Romain, Charles Rzepa, Henry S. Seoane, Felipe ACS Omega [Image: see text] There is an increasing focus on the part of academic institutions, funding agencies, and publishers, if not researchers themselves, on preservation and sharing of research data. Motivations for sharing include research integrity, replicability, and reuse. One of the barriers to publishing data is the extra work involved in preparing data for publication once a journal article and its supporting information have been completed. In this work, a method is described to generate both human and machine-readable supporting information directly from the primary instrumental data files and to generate the metadata to ensure it is published in accordance with findable, accessible, interoperable, and reusable (FAIR) guidelines. Using this approach, both the human readable supporting information and the primary (raw) data can be submitted simultaneously with little extra effort. Although traditionally the data package would be sent to a journal publisher for publication alongside the article, the data package could also be published independently in an institutional FAIR data repository. Workflows are described that store the data packages and generate metadata appropriate for such a repository. The methods both to generate and to publish the data packages have been implemented for NMR data, but the concept is extensible to other types of spectroscopic data as well. American Chemical Society 2019-02-14 /pmc/articles/PMC6648158/ /pubmed/31459544 http://dx.doi.org/10.1021/acsomega.8b03005 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Barba, Agustin
Dominguez, Santiago
Cobas, Carlos
Martinsen, David P.
Romain, Charles
Rzepa, Henry S.
Seoane, Felipe
Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data
title Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data
title_full Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data
title_fullStr Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data
title_full_unstemmed Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data
title_short Workflows Allowing Creation of Journal Article Supporting Information and Findable, Accessible, Interoperable, and Reusable (FAIR)-Enabled Publication of Spectroscopic Data
title_sort workflows allowing creation of journal article supporting information and findable, accessible, interoperable, and reusable (fair)-enabled publication of spectroscopic data
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648158/
https://www.ncbi.nlm.nih.gov/pubmed/31459544
http://dx.doi.org/10.1021/acsomega.8b03005
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