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Biochemical reconstitution of UV-induced mutational processes

We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporati...

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Autores principales: Sugiyama, Tomohiko, Chen, Yizhang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648339/
https://www.ncbi.nlm.nih.gov/pubmed/31053851
http://dx.doi.org/10.1093/nar/gkz335
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author Sugiyama, Tomohiko
Chen, Yizhang
author_facet Sugiyama, Tomohiko
Chen, Yizhang
author_sort Sugiyama, Tomohiko
collection PubMed
description We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporating two dAMPs opposite of the dimers. The other process involves spontaneous deamination of cytosine, producing uracil in pyrimidine dimers, followed by monomerization of the dimers by secondary UV irradiation, and DNA synthesis by Pol δ. The mutational spectrum resulting from deamination without translesion synthesis is similar to a mutational signature found in melanomas, suggesting that cytosine deamination encountered by the replicative polymerase has a prominent role in melanoma development. However, CC>TT dinucleotide substitution, which is also commonly observed in melanomas, was produced almost exclusively by TLS. We propose that both TLS-dependent and deamination-dependent mutational processes are likely involved in UV-induced melanoma development.
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spelling pubmed-66483392019-07-29 Biochemical reconstitution of UV-induced mutational processes Sugiyama, Tomohiko Chen, Yizhang Nucleic Acids Res Genome Integrity, Repair and Replication We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporating two dAMPs opposite of the dimers. The other process involves spontaneous deamination of cytosine, producing uracil in pyrimidine dimers, followed by monomerization of the dimers by secondary UV irradiation, and DNA synthesis by Pol δ. The mutational spectrum resulting from deamination without translesion synthesis is similar to a mutational signature found in melanomas, suggesting that cytosine deamination encountered by the replicative polymerase has a prominent role in melanoma development. However, CC>TT dinucleotide substitution, which is also commonly observed in melanomas, was produced almost exclusively by TLS. We propose that both TLS-dependent and deamination-dependent mutational processes are likely involved in UV-induced melanoma development. Oxford University Press 2019-07-26 2019-05-04 /pmc/articles/PMC6648339/ /pubmed/31053851 http://dx.doi.org/10.1093/nar/gkz335 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Integrity, Repair and Replication
Sugiyama, Tomohiko
Chen, Yizhang
Biochemical reconstitution of UV-induced mutational processes
title Biochemical reconstitution of UV-induced mutational processes
title_full Biochemical reconstitution of UV-induced mutational processes
title_fullStr Biochemical reconstitution of UV-induced mutational processes
title_full_unstemmed Biochemical reconstitution of UV-induced mutational processes
title_short Biochemical reconstitution of UV-induced mutational processes
title_sort biochemical reconstitution of uv-induced mutational processes
topic Genome Integrity, Repair and Replication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648339/
https://www.ncbi.nlm.nih.gov/pubmed/31053851
http://dx.doi.org/10.1093/nar/gkz335
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