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Biochemical reconstitution of UV-induced mutational processes
We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporati...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648339/ https://www.ncbi.nlm.nih.gov/pubmed/31053851 http://dx.doi.org/10.1093/nar/gkz335 |
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author | Sugiyama, Tomohiko Chen, Yizhang |
author_facet | Sugiyama, Tomohiko Chen, Yizhang |
author_sort | Sugiyama, Tomohiko |
collection | PubMed |
description | We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporating two dAMPs opposite of the dimers. The other process involves spontaneous deamination of cytosine, producing uracil in pyrimidine dimers, followed by monomerization of the dimers by secondary UV irradiation, and DNA synthesis by Pol δ. The mutational spectrum resulting from deamination without translesion synthesis is similar to a mutational signature found in melanomas, suggesting that cytosine deamination encountered by the replicative polymerase has a prominent role in melanoma development. However, CC>TT dinucleotide substitution, which is also commonly observed in melanomas, was produced almost exclusively by TLS. We propose that both TLS-dependent and deamination-dependent mutational processes are likely involved in UV-induced melanoma development. |
format | Online Article Text |
id | pubmed-6648339 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-66483392019-07-29 Biochemical reconstitution of UV-induced mutational processes Sugiyama, Tomohiko Chen, Yizhang Nucleic Acids Res Genome Integrity, Repair and Replication We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporating two dAMPs opposite of the dimers. The other process involves spontaneous deamination of cytosine, producing uracil in pyrimidine dimers, followed by monomerization of the dimers by secondary UV irradiation, and DNA synthesis by Pol δ. The mutational spectrum resulting from deamination without translesion synthesis is similar to a mutational signature found in melanomas, suggesting that cytosine deamination encountered by the replicative polymerase has a prominent role in melanoma development. However, CC>TT dinucleotide substitution, which is also commonly observed in melanomas, was produced almost exclusively by TLS. We propose that both TLS-dependent and deamination-dependent mutational processes are likely involved in UV-induced melanoma development. Oxford University Press 2019-07-26 2019-05-04 /pmc/articles/PMC6648339/ /pubmed/31053851 http://dx.doi.org/10.1093/nar/gkz335 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Integrity, Repair and Replication Sugiyama, Tomohiko Chen, Yizhang Biochemical reconstitution of UV-induced mutational processes |
title | Biochemical reconstitution of UV-induced mutational processes |
title_full | Biochemical reconstitution of UV-induced mutational processes |
title_fullStr | Biochemical reconstitution of UV-induced mutational processes |
title_full_unstemmed | Biochemical reconstitution of UV-induced mutational processes |
title_short | Biochemical reconstitution of UV-induced mutational processes |
title_sort | biochemical reconstitution of uv-induced mutational processes |
topic | Genome Integrity, Repair and Replication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648339/ https://www.ncbi.nlm.nih.gov/pubmed/31053851 http://dx.doi.org/10.1093/nar/gkz335 |
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