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Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates

Humans carry a much larger percentage of body fat than other primates. Despite the central role of adipose tissue in metabolism, little is known about the evolution of white adipose tissue in primates. Phenotypic divergence is often caused by genetic divergence in cis-regulatory regions. We examined...

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Autores principales: Swain-Lenz, Devjanee, Berrio, Alejandro, Safi, Alexias, Crawford, Gregory E, Wray, Gregory A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648876/
https://www.ncbi.nlm.nih.gov/pubmed/31233101
http://dx.doi.org/10.1093/gbe/evz134
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author Swain-Lenz, Devjanee
Berrio, Alejandro
Safi, Alexias
Crawford, Gregory E
Wray, Gregory A
author_facet Swain-Lenz, Devjanee
Berrio, Alejandro
Safi, Alexias
Crawford, Gregory E
Wray, Gregory A
author_sort Swain-Lenz, Devjanee
collection PubMed
description Humans carry a much larger percentage of body fat than other primates. Despite the central role of adipose tissue in metabolism, little is known about the evolution of white adipose tissue in primates. Phenotypic divergence is often caused by genetic divergence in cis-regulatory regions. We examined the cis-regulatory landscape of fat during human origins by performing comparative analyses of chromatin accessibility in human and chimpanzee adipose tissue using rhesus macaque as an outgroup. We find that many regions that have decreased accessibility in humans are enriched for promoter and enhancer sequences, are depleted for signatures of negative selection, are located near genes involved with lipid metabolism, and contain a short sequence motif involved in the beigeing of fat, the process in which lipid-storing white adipocytes are transdifferentiated into thermogenic beige adipocytes. The collective closing of many putative regulatory regions associated with beigeing of fat suggests a mechanism that increases body fat in humans.
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spelling pubmed-66488762019-07-29 Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates Swain-Lenz, Devjanee Berrio, Alejandro Safi, Alexias Crawford, Gregory E Wray, Gregory A Genome Biol Evol Letter Humans carry a much larger percentage of body fat than other primates. Despite the central role of adipose tissue in metabolism, little is known about the evolution of white adipose tissue in primates. Phenotypic divergence is often caused by genetic divergence in cis-regulatory regions. We examined the cis-regulatory landscape of fat during human origins by performing comparative analyses of chromatin accessibility in human and chimpanzee adipose tissue using rhesus macaque as an outgroup. We find that many regions that have decreased accessibility in humans are enriched for promoter and enhancer sequences, are depleted for signatures of negative selection, are located near genes involved with lipid metabolism, and contain a short sequence motif involved in the beigeing of fat, the process in which lipid-storing white adipocytes are transdifferentiated into thermogenic beige adipocytes. The collective closing of many putative regulatory regions associated with beigeing of fat suggests a mechanism that increases body fat in humans. Oxford University Press 2019-06-24 /pmc/articles/PMC6648876/ /pubmed/31233101 http://dx.doi.org/10.1093/gbe/evz134 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Letter
Swain-Lenz, Devjanee
Berrio, Alejandro
Safi, Alexias
Crawford, Gregory E
Wray, Gregory A
Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates
title Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates
title_full Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates
title_fullStr Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates
title_full_unstemmed Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates
title_short Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates
title_sort comparative analyses of chromatin landscape in white adipose tissue suggest humans may have less beigeing potential than other primates
topic Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648876/
https://www.ncbi.nlm.nih.gov/pubmed/31233101
http://dx.doi.org/10.1093/gbe/evz134
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