Cargando…

3D-PP: A Tool for Discovering Conserved Three-Dimensional Protein Patterns

Discovering conserved three-dimensional (3D) patterns among protein structures may provide valuable insights into protein classification, functional annotations or the rational design of multi-target drugs. Thus, several computational tools have been developed to discover and compare protein 3D-patt...

Descripción completa

Detalles Bibliográficos
Autores principales:	Valdés-Jiménez, Alejandro, Larriba-Pey, Josep-L., Núñez-Vivanco, Gabriel, Reyes-Parada, Miguel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6651053/ https://www.ncbi.nlm.nih.gov/pubmed/31261733 http://dx.doi.org/10.3390/ijms20133174

Ejemplares similares

Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach
por: Núñez-Vivanco, Gabriel, et al.
Publicado: (2016)

A New Strategy for Multitarget Drug Discovery/Repositioning Through the Identification of Similar 3D Amino Acid Patterns Among Proteins Structures: The Case of Tafluprost and its Effects on Cardiac Ion Channels
por: Valdés-Jiménez, Alejandro, et al.
Publicado: (2022)

3D similarities between the binding sites of monoaminergic target proteins
por: Núñez-Vivanco, Gabriel, et al.
Publicado: (2018)

Identification of Critical Residues in the Carboxy Terminus of the Dopamine Transporter Involved in the G Protein βγ-Induced Dopamine Efflux
por: Pino, José A., et al.
Publicado: (2021)

SAFoldNet: A Novel Tool for Discovering and Aligning Three-Dimensional Protein Structures Based on a Neural Network
por: Petrovskiy, Denis V., et al.
Publicado: (2023)

Conservative shaping combined with three-dimensional cleaning can be a powerful tool: Case series
por: Iandolo, Alfredo, et al.
Publicado: (2020)

Three-dimensional planning in craniomaxillofacial surgery
por: Rubio-Palau, Josep, et al.
Publicado: (2016)

A Manual Segmentation Tool for Three-Dimensional Neuron Datasets
por: Magliaro, Chiara, et al.
Publicado: (2017)

Pharmacological Characterization of 4-Methylthioamphetamine Derivatives
por: Guajardo, Fabrizzio G., et al.
Publicado: (2020)

CDD: conserved domains and protein three-dimensional structure
por: Marchler-Bauer, Aron, et al.
Publicado: (2013)

Three‐dimensional mapping discovered arrhythmic substrate missed in the initial diagnosis of idiopathic ventricular fibrillation
por: Harano, Yoshihiro, et al.
Publicado: (2021)

Discovering Low-Dimensional Descriptions of Multineuronal Dependencies
por: Mitskopoulos, Lazaros, et al.
Publicado: (2023)

Similarities between the Binding Sites of SB-206553 at Serotonin Type 2 and Alpha7 Acetylcholine Nicotinic Receptors: Rationale for Its Polypharmacological Profile
por: Möller-Acuña, Patricia, et al.
Publicado: (2015)

Conservation of the three-dimensional structure in non-homologous or unrelated proteins
por: Sousounis, Konstantinos, et al.
Publicado: (2012)

QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs
por: Frees, Scott, et al.
Publicado: (2014)

The potential role of three-dimensional surface imaging as a tool to evaluate aesthetic outcome after Breast Conserving Therapy (BCT)
por: O’Connell, Rachel L., et al.
Publicado: (2017)

Discovering conservation laws using optimal transport and manifold learning
por: Lu, Peter Y., et al.
Publicado: (2023)

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA
por: Capriotti, Emidio, et al.
Publicado: (2010)

PSC-db: A Structured and Searchable 3D-Database for Plant Secondary Compounds
por: Valdés-Jiménez, Alejandro, et al.
Publicado: (2021)

A Bootstrap Based Measure Robust to the Choice of Normalization Methods for Detecting Rhythmic Features in High Dimensional Data
por: Larriba, Yolanda, et al.
Publicado: (2018)

Three Synchronous Tumors Discovered in SIADH Investigation
por: Fonseca, Ricardo, et al.
Publicado: (2017)

A Scalable Approach for Discovering Conserved Active Subnetworks across Species
por: Deshpande, Raamesh, et al.
Publicado: (2010)

Three-dimensional Printer Molds for Vaginal Agenesis: An Individualized Approach as Conservative Treatment
por: Fernandes, Marina Silva, et al.
Publicado: (2022)

ZINC: A Free Tool to Discover Chemistry for Biology
por: Irwin, John J., et al.
Publicado: (2012)

Diagnostic protocols—A consultation tool still to be discovered
por: Fink, Waltraud, et al.
Publicado: (2017)

trfermikit: a tool to discover VNTR-associated deletions
por: McHale, Peter, et al.
Publicado: (2021)

Three-Dimensional Scapular Border Method for Glenoid Version Measurements
por: Wilder, Lauren, et al.
Publicado: (2023)

Conservation of Three-Dimensional Structure of Lepidoptera and Trichoptera L-Fibroins for 290 Million Years
por: Stewart, Russell J., et al.
Publicado: (2022)

Three-Dimensional 3D Culture Models in Gynecological and Breast Cancer Research
por: Salinas-Vera, Yarely M., et al.
Publicado: (2022)

Discovering large conserved functional components in global network alignment by graph matching
por: Zhu, Yuanyuan, et al.
Publicado: (2018)

Discovered and disappearing? Conservation genetics of a recently named Australian carnivorous marsupial
por: Mutton, Thomas Y., et al.
Publicado: (2018)

Discovering Conserved Properties of Brain Organization Through Multimodal Integration and Interspecies Comparison
por: Fulcher, Ben D
Publicado: (2019)

Discovering the drivers of clonal hematopoiesis
por: Pich, Oriol, et al.
Publicado: (2022)

CATIA Core Tools: Computer Aided Three-Dimensional Interactive Application
por: Michaud, Michel
Publicado: (2012)

Three dimensional electron microscopy and in silico tools for macromolecular structure determination
por: Borkotoky, Subhomoi, et al.
Publicado: (2013)

Three Dimensional Printing as a Tool For Anatomical Training in Lung Surgery
por: Meershoek, Armelle J. A., et al.
Publicado: (2023)

The MERG Suite: Tools for discovering competencies and associated learning resources
por: Bhupatiraju, Ravi Teja, et al.
Publicado: (2008)

Computational Tools for Discovering and Engineering Natural Product Biosynthetic Pathways
por: Ren, Hengqian, et al.
Publicado: (2019)

Antibody Libraries as Tools to Discover Functional Antibodies and Receptor Pleiotropism
por: Lin, Chih-Wei, et al.
Publicado: (2021)

Two- and three-dimensional patterns of the face
por: Hallinan, Peter W, et al.
Publicado: (1999)

Cannot write session to /tmp/vufind_sessions/sess_v2u7aqicchbeqk81agq31jgob2