Cargando…

Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma

Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the...

Descripción completa

Detalles Bibliográficos
Autores principales: Salavaty, Abbas, Rezvani, Zahra, Najafi, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6652661/
https://www.ncbi.nlm.nih.gov/pubmed/31211495
http://dx.doi.org/10.1111/jcmm.14458
_version_ 1783438561237794816
author Salavaty, Abbas
Rezvani, Zahra
Najafi, Ali
author_facet Salavaty, Abbas
Rezvani, Zahra
Najafi, Ali
author_sort Salavaty, Abbas
collection PubMed
description Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the most prevalent subtype of lung cancer. To this end, the processed data of The Cancer Genome Atlas LUAD were retrieved from GEPIA and circlncRNAnet databases, matched with each other and integrated with the analysis results of a non‐small cell lung cancer plasma RNA‐Seq study. Then, the data were filtered in order to separate the differentially expressed lncRNAs that have a prognostic value for LUAD. Finally, the selected lncRNAs were functionally annotated using a bioinformatic and systems biology approach. Accordingly, we identified 19 lncRNAs as the novel LUAD prognostic lncRNAs. Also, based on our results, all 19 lncRNAs might be involved in lung cancer‐related biological processes. Overall, we suggested several novel biomarkers and drug targets which could help early diagnosis, prognosis and treatment of LUAD patients.
format Online
Article
Text
id pubmed-6652661
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-66526612019-08-01 Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma Salavaty, Abbas Rezvani, Zahra Najafi, Ali J Cell Mol Med Original Articles Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the most prevalent subtype of lung cancer. To this end, the processed data of The Cancer Genome Atlas LUAD were retrieved from GEPIA and circlncRNAnet databases, matched with each other and integrated with the analysis results of a non‐small cell lung cancer plasma RNA‐Seq study. Then, the data were filtered in order to separate the differentially expressed lncRNAs that have a prognostic value for LUAD. Finally, the selected lncRNAs were functionally annotated using a bioinformatic and systems biology approach. Accordingly, we identified 19 lncRNAs as the novel LUAD prognostic lncRNAs. Also, based on our results, all 19 lncRNAs might be involved in lung cancer‐related biological processes. Overall, we suggested several novel biomarkers and drug targets which could help early diagnosis, prognosis and treatment of LUAD patients. John Wiley and Sons Inc. 2019-06-18 2019-08 /pmc/articles/PMC6652661/ /pubmed/31211495 http://dx.doi.org/10.1111/jcmm.14458 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Salavaty, Abbas
Rezvani, Zahra
Najafi, Ali
Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
title Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
title_full Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
title_fullStr Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
title_full_unstemmed Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
title_short Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
title_sort survival analysis and functional annotation of long non‐coding rnas in lung adenocarcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6652661/
https://www.ncbi.nlm.nih.gov/pubmed/31211495
http://dx.doi.org/10.1111/jcmm.14458
work_keys_str_mv AT salavatyabbas survivalanalysisandfunctionalannotationoflongnoncodingrnasinlungadenocarcinoma
AT rezvanizahra survivalanalysisandfunctionalannotationoflongnoncodingrnasinlungadenocarcinoma
AT najafiali survivalanalysisandfunctionalannotationoflongnoncodingrnasinlungadenocarcinoma