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Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6652661/ https://www.ncbi.nlm.nih.gov/pubmed/31211495 http://dx.doi.org/10.1111/jcmm.14458 |
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author | Salavaty, Abbas Rezvani, Zahra Najafi, Ali |
author_facet | Salavaty, Abbas Rezvani, Zahra Najafi, Ali |
author_sort | Salavaty, Abbas |
collection | PubMed |
description | Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the most prevalent subtype of lung cancer. To this end, the processed data of The Cancer Genome Atlas LUAD were retrieved from GEPIA and circlncRNAnet databases, matched with each other and integrated with the analysis results of a non‐small cell lung cancer plasma RNA‐Seq study. Then, the data were filtered in order to separate the differentially expressed lncRNAs that have a prognostic value for LUAD. Finally, the selected lncRNAs were functionally annotated using a bioinformatic and systems biology approach. Accordingly, we identified 19 lncRNAs as the novel LUAD prognostic lncRNAs. Also, based on our results, all 19 lncRNAs might be involved in lung cancer‐related biological processes. Overall, we suggested several novel biomarkers and drug targets which could help early diagnosis, prognosis and treatment of LUAD patients. |
format | Online Article Text |
id | pubmed-6652661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66526612019-08-01 Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma Salavaty, Abbas Rezvani, Zahra Najafi, Ali J Cell Mol Med Original Articles Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the most prevalent subtype of lung cancer. To this end, the processed data of The Cancer Genome Atlas LUAD were retrieved from GEPIA and circlncRNAnet databases, matched with each other and integrated with the analysis results of a non‐small cell lung cancer plasma RNA‐Seq study. Then, the data were filtered in order to separate the differentially expressed lncRNAs that have a prognostic value for LUAD. Finally, the selected lncRNAs were functionally annotated using a bioinformatic and systems biology approach. Accordingly, we identified 19 lncRNAs as the novel LUAD prognostic lncRNAs. Also, based on our results, all 19 lncRNAs might be involved in lung cancer‐related biological processes. Overall, we suggested several novel biomarkers and drug targets which could help early diagnosis, prognosis and treatment of LUAD patients. John Wiley and Sons Inc. 2019-06-18 2019-08 /pmc/articles/PMC6652661/ /pubmed/31211495 http://dx.doi.org/10.1111/jcmm.14458 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Salavaty, Abbas Rezvani, Zahra Najafi, Ali Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma |
title | Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma |
title_full | Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma |
title_fullStr | Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma |
title_full_unstemmed | Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma |
title_short | Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma |
title_sort | survival analysis and functional annotation of long non‐coding rnas in lung adenocarcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6652661/ https://www.ncbi.nlm.nih.gov/pubmed/31211495 http://dx.doi.org/10.1111/jcmm.14458 |
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