Cargando…

Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC

Renal cell carcinoma (RCC) is the second most lethal urinary cancer. RCC is frequently asymptomatic and it is already metastatic at diagnosis. There is an urgent necessity for RCC specific biomarkers selection for diagnostic and prognostic purposes. In present study, we applied liquid chromatography...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Xiaoyan, Zhang, Mingxin, Liu, Xiang, Sun, Haidan, Guo, Zhengguang, Tang, Xiaoyue, Wang, Zhan, Li, Jing, Li, Hanzhong, Sun, Wei, Zhang, Yushi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6653643/
https://www.ncbi.nlm.nih.gov/pubmed/31380290
http://dx.doi.org/10.3389/fonc.2019.00663
_version_ 1783438595622699008
author Liu, Xiaoyan
Zhang, Mingxin
Liu, Xiang
Sun, Haidan
Guo, Zhengguang
Tang, Xiaoyue
Wang, Zhan
Li, Jing
Li, Hanzhong
Sun, Wei
Zhang, Yushi
author_facet Liu, Xiaoyan
Zhang, Mingxin
Liu, Xiang
Sun, Haidan
Guo, Zhengguang
Tang, Xiaoyue
Wang, Zhan
Li, Jing
Li, Hanzhong
Sun, Wei
Zhang, Yushi
author_sort Liu, Xiaoyan
collection PubMed
description Renal cell carcinoma (RCC) is the second most lethal urinary cancer. RCC is frequently asymptomatic and it is already metastatic at diagnosis. There is an urgent necessity for RCC specific biomarkers selection for diagnostic and prognostic purposes. In present study, we applied liquid chromatography—mass spectrometry (LC-MS) based metabolomics to analyze urine samples of 100 RCC, 34 benign kidney tumors and 129 healthy controls. Differential metabolites were analyzed to investigate if urine metabolites could differentiate RCC from non-RCC. A panel consisting of 9 metabolites showed the best predictive ability for RCC from the health controls with an area under the curve (AUC) values of 0.905 for the training dataset and 0.885 for the validation dataset. Separation was observed between the RCC and benign samples with an AUC of 0.816. RCC clinical stages (T1 and T2 vs. T3 and T4) could be separated using a panel of urine metabolites with an AUC of 0.813. One metabolite, N-formylkynurenine, was discovered to have potential value for RCC diagnosis from non-RCC subjects with an AUC of 0.808. Pathway enrichment analysis indicated that tryptophan metabolism was an important pathway in RCC. Our data concluded that urine metabolomics could be used for RCC diagnosis and would provide candidates for further targeted metabolomics analysis of RCC.
format Online
Article
Text
id pubmed-6653643
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-66536432019-08-02 Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC Liu, Xiaoyan Zhang, Mingxin Liu, Xiang Sun, Haidan Guo, Zhengguang Tang, Xiaoyue Wang, Zhan Li, Jing Li, Hanzhong Sun, Wei Zhang, Yushi Front Oncol Oncology Renal cell carcinoma (RCC) is the second most lethal urinary cancer. RCC is frequently asymptomatic and it is already metastatic at diagnosis. There is an urgent necessity for RCC specific biomarkers selection for diagnostic and prognostic purposes. In present study, we applied liquid chromatography—mass spectrometry (LC-MS) based metabolomics to analyze urine samples of 100 RCC, 34 benign kidney tumors and 129 healthy controls. Differential metabolites were analyzed to investigate if urine metabolites could differentiate RCC from non-RCC. A panel consisting of 9 metabolites showed the best predictive ability for RCC from the health controls with an area under the curve (AUC) values of 0.905 for the training dataset and 0.885 for the validation dataset. Separation was observed between the RCC and benign samples with an AUC of 0.816. RCC clinical stages (T1 and T2 vs. T3 and T4) could be separated using a panel of urine metabolites with an AUC of 0.813. One metabolite, N-formylkynurenine, was discovered to have potential value for RCC diagnosis from non-RCC subjects with an AUC of 0.808. Pathway enrichment analysis indicated that tryptophan metabolism was an important pathway in RCC. Our data concluded that urine metabolomics could be used for RCC diagnosis and would provide candidates for further targeted metabolomics analysis of RCC. Frontiers Media S.A. 2019-07-17 /pmc/articles/PMC6653643/ /pubmed/31380290 http://dx.doi.org/10.3389/fonc.2019.00663 Text en Copyright © 2019 Liu, Zhang, Liu, Sun, Guo, Tang, Wang, Li, Li, Sun and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Liu, Xiaoyan
Zhang, Mingxin
Liu, Xiang
Sun, Haidan
Guo, Zhengguang
Tang, Xiaoyue
Wang, Zhan
Li, Jing
Li, Hanzhong
Sun, Wei
Zhang, Yushi
Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC
title Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC
title_full Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC
title_fullStr Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC
title_full_unstemmed Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC
title_short Urine Metabolomics for Renal Cell Carcinoma (RCC) Prediction: Tryptophan Metabolism as an Important Pathway in RCC
title_sort urine metabolomics for renal cell carcinoma (rcc) prediction: tryptophan metabolism as an important pathway in rcc
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6653643/
https://www.ncbi.nlm.nih.gov/pubmed/31380290
http://dx.doi.org/10.3389/fonc.2019.00663
work_keys_str_mv AT liuxiaoyan urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT zhangmingxin urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT liuxiang urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT sunhaidan urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT guozhengguang urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT tangxiaoyue urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT wangzhan urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT lijing urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT lihanzhong urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT sunwei urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc
AT zhangyushi urinemetabolomicsforrenalcellcarcinomarccpredictiontryptophanmetabolismasanimportantpathwayinrcc