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Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid

The structure of zymonic acid (systematic name: 4-hy­droxy-2-methyl-5-oxo-2,5-di­hydro­furan-2-carb­oxy­lic acid), C(6)H(6)O(5), which had previously eluded crystallographic determination, is presented here for the first time. It forms by intra­molecular condensation of parapyruvic acid, which is th...

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Autores principales: Heger, Dominik, Eugene, Alexis J., Parkin, Sean R., Guzman, Marcelo I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6658982/
https://www.ncbi.nlm.nih.gov/pubmed/31391982
http://dx.doi.org/10.1107/S2056989019007072
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author Heger, Dominik
Eugene, Alexis J.
Parkin, Sean R.
Guzman, Marcelo I.
author_facet Heger, Dominik
Eugene, Alexis J.
Parkin, Sean R.
Guzman, Marcelo I.
author_sort Heger, Dominik
collection PubMed
description The structure of zymonic acid (systematic name: 4-hy­droxy-2-methyl-5-oxo-2,5-di­hydro­furan-2-carb­oxy­lic acid), C(6)H(6)O(5), which had previously eluded crystallographic determination, is presented here for the first time. It forms by intra­molecular condensation of parapyruvic acid, which is the product of aldol condensation of pyruvic acid. A redetermination of the crystal structure of pyruvic acid (systematic name: 2-oxo­propanoic acid), C(3)H(4)O(3), at low temperature (90 K) and with increased precision, is also presented [for the previous structure, see: Harata et al. (1977 ▸). Acta Cryst. B33, 210–212]. In zymonic acid, the hy­droxy­lactone ring is close to planar (r.m.s. deviation = 0.0108 Å) and the dihedral angle between the ring and the plane formed by the bonds of the methyl and carb­oxy­lic acid carbon atoms to the ring is 88.68 (7)°. The torsion angle of the carb­oxy­lic acid group relative to the ring is 12.04 (16)°. The pyruvic acid mol­ecule is almost planar, having a dihedral angle between the carb­oxy­lic acid and methyl-ketone groups of 3.95 (6)°. Inter­molecular inter­actions in both crystal structures are dominated by hydrogen bonding. The common R (2) (2)(8) hydrogen-bonding motif links carb­oxy­lic acid groups on adjacent mol­ecules in both structures. In zymonic acid, this results in dimers about a crystallographic twofold of space group C2/c, which forces the carb­oxy­lic acid group to be disordered exactly 50:50, which scrambles the carbonyl and hydroxyl groups and gives an apparent equalization of the C—O bond lengths [1.2568 (16) and 1.2602 (16) Å]. The other hydrogen bonds in zymonic acid (O—H⋯O and weak C—H⋯O), link mol­ecules across a 2(1)-screw axis, and generate an R (2) (2)(9) motif. These hydrogen-bonding inter­actions propagate to form extended pleated sheets in the ab plane. Stacking of these zigzag sheets along c involves only van der Waals contacts. In pyruvic acid, inversion-related mol­ecules are linked into R (2) (2)(8) dimers, with van der Waals inter­actions between dimers as the only other inter­molecular contacts.
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spelling pubmed-66589822019-08-07 Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid Heger, Dominik Eugene, Alexis J. Parkin, Sean R. Guzman, Marcelo I. Acta Crystallogr E Crystallogr Commun Research Communications The structure of zymonic acid (systematic name: 4-hy­droxy-2-methyl-5-oxo-2,5-di­hydro­furan-2-carb­oxy­lic acid), C(6)H(6)O(5), which had previously eluded crystallographic determination, is presented here for the first time. It forms by intra­molecular condensation of parapyruvic acid, which is the product of aldol condensation of pyruvic acid. A redetermination of the crystal structure of pyruvic acid (systematic name: 2-oxo­propanoic acid), C(3)H(4)O(3), at low temperature (90 K) and with increased precision, is also presented [for the previous structure, see: Harata et al. (1977 ▸). Acta Cryst. B33, 210–212]. In zymonic acid, the hy­droxy­lactone ring is close to planar (r.m.s. deviation = 0.0108 Å) and the dihedral angle between the ring and the plane formed by the bonds of the methyl and carb­oxy­lic acid carbon atoms to the ring is 88.68 (7)°. The torsion angle of the carb­oxy­lic acid group relative to the ring is 12.04 (16)°. The pyruvic acid mol­ecule is almost planar, having a dihedral angle between the carb­oxy­lic acid and methyl-ketone groups of 3.95 (6)°. Inter­molecular inter­actions in both crystal structures are dominated by hydrogen bonding. The common R (2) (2)(8) hydrogen-bonding motif links carb­oxy­lic acid groups on adjacent mol­ecules in both structures. In zymonic acid, this results in dimers about a crystallographic twofold of space group C2/c, which forces the carb­oxy­lic acid group to be disordered exactly 50:50, which scrambles the carbonyl and hydroxyl groups and gives an apparent equalization of the C—O bond lengths [1.2568 (16) and 1.2602 (16) Å]. The other hydrogen bonds in zymonic acid (O—H⋯O and weak C—H⋯O), link mol­ecules across a 2(1)-screw axis, and generate an R (2) (2)(9) motif. These hydrogen-bonding inter­actions propagate to form extended pleated sheets in the ab plane. Stacking of these zigzag sheets along c involves only van der Waals contacts. In pyruvic acid, inversion-related mol­ecules are linked into R (2) (2)(8) dimers, with van der Waals inter­actions between dimers as the only other inter­molecular contacts. International Union of Crystallography 2019-05-24 /pmc/articles/PMC6658982/ /pubmed/31391982 http://dx.doi.org/10.1107/S2056989019007072 Text en © Heger et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Communications
Heger, Dominik
Eugene, Alexis J.
Parkin, Sean R.
Guzman, Marcelo I.
Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
title Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
title_full Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
title_fullStr Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
title_full_unstemmed Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
title_short Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
title_sort crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6658982/
https://www.ncbi.nlm.nih.gov/pubmed/31391982
http://dx.doi.org/10.1107/S2056989019007072
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