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Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii

The Snowtrout, Schizothorax richardsonii, is a vulnerable fish species found in different rivers and rivulets of the Himalayan region. The species is also a suitable poikilotherm to study the low-temperature tolerance as it dwells well at a temperature range of 5–20 °C. The solute carrier (SLC) grou...

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Autores principales: Barat, Ashoktaru, Sahoo, Prabhati Kumari, Kumar, Rohit, Goel, Chirag, Siva, C., Ali, Shahnawaz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6660431/
https://www.ncbi.nlm.nih.gov/pubmed/31372384
http://dx.doi.org/10.1016/j.dib.2019.103712
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author Barat, Ashoktaru
Sahoo, Prabhati Kumari
Kumar, Rohit
Goel, Chirag
Siva, C.
Ali, Shahnawaz
author_facet Barat, Ashoktaru
Sahoo, Prabhati Kumari
Kumar, Rohit
Goel, Chirag
Siva, C.
Ali, Shahnawaz
author_sort Barat, Ashoktaru
collection PubMed
description The Snowtrout, Schizothorax richardsonii, is a vulnerable fish species found in different rivers and rivulets of the Himalayan region. The species is also a suitable poikilotherm to study the low-temperature tolerance as it dwells well at a temperature range of 5–20 °C. The solute carrier (SLC) group of membrane transport proteins play an integral role in cellular acclimation response. The present RNA sequencing was done to identify solute carrier transporter which are the major gene cascades responsible for transport of sugars, amino acids, oligonucleotides, ions, drugs, etc. to and from the cell organelles. A reference transcriptome database was created from liver tissue of Schizothorax richardsonii through RNA sequencing on Illumina HiSeq 2000 platform. The sequences were annotated and characterized under various solute carrier families in the species. So far, 113 transcripts were identified as solute carrier transporter genes categorized under 13 different families. This data will be useful for many researchers working on gene cloning and differential expression of solute carriers.
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spelling pubmed-66604312019-08-01 Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii Barat, Ashoktaru Sahoo, Prabhati Kumari Kumar, Rohit Goel, Chirag Siva, C. Ali, Shahnawaz Data Brief Agricultural and Biological Science The Snowtrout, Schizothorax richardsonii, is a vulnerable fish species found in different rivers and rivulets of the Himalayan region. The species is also a suitable poikilotherm to study the low-temperature tolerance as it dwells well at a temperature range of 5–20 °C. The solute carrier (SLC) group of membrane transport proteins play an integral role in cellular acclimation response. The present RNA sequencing was done to identify solute carrier transporter which are the major gene cascades responsible for transport of sugars, amino acids, oligonucleotides, ions, drugs, etc. to and from the cell organelles. A reference transcriptome database was created from liver tissue of Schizothorax richardsonii through RNA sequencing on Illumina HiSeq 2000 platform. The sequences were annotated and characterized under various solute carrier families in the species. So far, 113 transcripts were identified as solute carrier transporter genes categorized under 13 different families. This data will be useful for many researchers working on gene cloning and differential expression of solute carriers. Elsevier 2019-03-07 /pmc/articles/PMC6660431/ /pubmed/31372384 http://dx.doi.org/10.1016/j.dib.2019.103712 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Barat, Ashoktaru
Sahoo, Prabhati Kumari
Kumar, Rohit
Goel, Chirag
Siva, C.
Ali, Shahnawaz
Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii
title Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii
title_full Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii
title_fullStr Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii
title_full_unstemmed Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii
title_short Data on solute carrier transporter genes of a threatened Himalayan fish species – Schizothorax richardsonii
title_sort data on solute carrier transporter genes of a threatened himalayan fish species – schizothorax richardsonii
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6660431/
https://www.ncbi.nlm.nih.gov/pubmed/31372384
http://dx.doi.org/10.1016/j.dib.2019.103712
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