Cargando…
Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids
The study aim was to utilise multiple feature selection methods in order to select the most important parameters from clinical patient data for high-intensity focused ultrasound (HIFU) treatment outcome classification in uterine fibroids. The study was retrospective using patient data from 66 HIFU t...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6662821/ https://www.ncbi.nlm.nih.gov/pubmed/31358836 http://dx.doi.org/10.1038/s41598-019-47484-y |
_version_ | 1783439718573146112 |
---|---|
author | Suomi, Visa Komar, Gaber Sainio, Teija Joronen, Kirsi Perheentupa, Antti Blanco Sequeiros, Roberto |
author_facet | Suomi, Visa Komar, Gaber Sainio, Teija Joronen, Kirsi Perheentupa, Antti Blanco Sequeiros, Roberto |
author_sort | Suomi, Visa |
collection | PubMed |
description | The study aim was to utilise multiple feature selection methods in order to select the most important parameters from clinical patient data for high-intensity focused ultrasound (HIFU) treatment outcome classification in uterine fibroids. The study was retrospective using patient data from 66 HIFU treatments with 89 uterine fibroids. A total of 39 features were extracted from the patient data and 14 different filter-based feature selection methods were used to select the most informative features. The selected features were then used in a support vector classification (SVC) model to evaluate the performance of these parameters in predicting HIFU therapy outcome. The therapy outcome was defined as non-perfused volume (NPV) ratio in three classes: <30%, 30–80% or >80%. The ten most highly ranked features in order were: fibroid diameter, subcutaneous fat thickness, fibroid volume, fibroid distance, Funaki type I, fundus location, gravidity, Funaki type III, submucosal fibroid type and urinary symptoms. The maximum F1-micro classification score was 0.63 using the top ten features from Mutual Information Maximisation (MIM) and Joint Mutual Information (JMI) feature selection methods. Classification performance of HIFU therapy outcome prediction in uterine fibroids is highly dependent on the chosen feature set which should be determined prior using different classifiers. |
format | Online Article Text |
id | pubmed-6662821 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66628212019-08-02 Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids Suomi, Visa Komar, Gaber Sainio, Teija Joronen, Kirsi Perheentupa, Antti Blanco Sequeiros, Roberto Sci Rep Article The study aim was to utilise multiple feature selection methods in order to select the most important parameters from clinical patient data for high-intensity focused ultrasound (HIFU) treatment outcome classification in uterine fibroids. The study was retrospective using patient data from 66 HIFU treatments with 89 uterine fibroids. A total of 39 features were extracted from the patient data and 14 different filter-based feature selection methods were used to select the most informative features. The selected features were then used in a support vector classification (SVC) model to evaluate the performance of these parameters in predicting HIFU therapy outcome. The therapy outcome was defined as non-perfused volume (NPV) ratio in three classes: <30%, 30–80% or >80%. The ten most highly ranked features in order were: fibroid diameter, subcutaneous fat thickness, fibroid volume, fibroid distance, Funaki type I, fundus location, gravidity, Funaki type III, submucosal fibroid type and urinary symptoms. The maximum F1-micro classification score was 0.63 using the top ten features from Mutual Information Maximisation (MIM) and Joint Mutual Information (JMI) feature selection methods. Classification performance of HIFU therapy outcome prediction in uterine fibroids is highly dependent on the chosen feature set which should be determined prior using different classifiers. Nature Publishing Group UK 2019-07-29 /pmc/articles/PMC6662821/ /pubmed/31358836 http://dx.doi.org/10.1038/s41598-019-47484-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Suomi, Visa Komar, Gaber Sainio, Teija Joronen, Kirsi Perheentupa, Antti Blanco Sequeiros, Roberto Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
title | Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
title_full | Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
title_fullStr | Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
title_full_unstemmed | Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
title_short | Comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
title_sort | comprehensive feature selection for classifying the treatment outcome of high-intensity ultrasound therapy in uterine fibroids |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6662821/ https://www.ncbi.nlm.nih.gov/pubmed/31358836 http://dx.doi.org/10.1038/s41598-019-47484-y |
work_keys_str_mv | AT suomivisa comprehensivefeatureselectionforclassifyingthetreatmentoutcomeofhighintensityultrasoundtherapyinuterinefibroids AT komargaber comprehensivefeatureselectionforclassifyingthetreatmentoutcomeofhighintensityultrasoundtherapyinuterinefibroids AT sainioteija comprehensivefeatureselectionforclassifyingthetreatmentoutcomeofhighintensityultrasoundtherapyinuterinefibroids AT joronenkirsi comprehensivefeatureselectionforclassifyingthetreatmentoutcomeofhighintensityultrasoundtherapyinuterinefibroids AT perheentupaantti comprehensivefeatureselectionforclassifyingthetreatmentoutcomeofhighintensityultrasoundtherapyinuterinefibroids AT blancosequeirosroberto comprehensivefeatureselectionforclassifyingthetreatmentoutcomeofhighintensityultrasoundtherapyinuterinefibroids |