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Facilitating reproducible project management and manuscript development in team science: The projects R package

The contemporary scientific community places a growing emphasis on the reproducibility of research. The projects R package is a free, open-source package created in the interest of facilitating reproducible research workflows. It adds to existing software tools for reproducible research and introduc...

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Detalles Bibliográficos
Autores principales: Krieger, Nikolas I., Perzynski, Adam T., Dalton, Jarrod E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6662995/
https://www.ncbi.nlm.nih.gov/pubmed/31356588
http://dx.doi.org/10.1371/journal.pone.0212390
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author Krieger, Nikolas I.
Perzynski, Adam T.
Dalton, Jarrod E.
author_facet Krieger, Nikolas I.
Perzynski, Adam T.
Dalton, Jarrod E.
author_sort Krieger, Nikolas I.
collection PubMed
description The contemporary scientific community places a growing emphasis on the reproducibility of research. The projects R package is a free, open-source package created in the interest of facilitating reproducible research workflows. It adds to existing software tools for reproducible research and introduces several practical features that are helpful for scientists and their collaborative research teams. For each individual project, it supplies a framework for storing raw and cleaned study data sets, and it provides script templates for protocol creation, data cleaning, data analysis and manuscript development. Internal databases of project and author information are generated and displayed, and manuscript title pages containing author lists and their affiliations are automatically generated from the internal database. File management tools allow teams to organize multiple projects. When used on a shared file system, multiple researchers can harmoniously contribute to the same project in a less punctuated manner, reducing the frequency of misunderstandings and the need for status updates.
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spelling pubmed-66629952019-08-07 Facilitating reproducible project management and manuscript development in team science: The projects R package Krieger, Nikolas I. Perzynski, Adam T. Dalton, Jarrod E. PLoS One Research Article The contemporary scientific community places a growing emphasis on the reproducibility of research. The projects R package is a free, open-source package created in the interest of facilitating reproducible research workflows. It adds to existing software tools for reproducible research and introduces several practical features that are helpful for scientists and their collaborative research teams. For each individual project, it supplies a framework for storing raw and cleaned study data sets, and it provides script templates for protocol creation, data cleaning, data analysis and manuscript development. Internal databases of project and author information are generated and displayed, and manuscript title pages containing author lists and their affiliations are automatically generated from the internal database. File management tools allow teams to organize multiple projects. When used on a shared file system, multiple researchers can harmoniously contribute to the same project in a less punctuated manner, reducing the frequency of misunderstandings and the need for status updates. Public Library of Science 2019-07-29 /pmc/articles/PMC6662995/ /pubmed/31356588 http://dx.doi.org/10.1371/journal.pone.0212390 Text en © 2019 Krieger et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Krieger, Nikolas I.
Perzynski, Adam T.
Dalton, Jarrod E.
Facilitating reproducible project management and manuscript development in team science: The projects R package
title Facilitating reproducible project management and manuscript development in team science: The projects R package
title_full Facilitating reproducible project management and manuscript development in team science: The projects R package
title_fullStr Facilitating reproducible project management and manuscript development in team science: The projects R package
title_full_unstemmed Facilitating reproducible project management and manuscript development in team science: The projects R package
title_short Facilitating reproducible project management and manuscript development in team science: The projects R package
title_sort facilitating reproducible project management and manuscript development in team science: the projects r package
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6662995/
https://www.ncbi.nlm.nih.gov/pubmed/31356588
http://dx.doi.org/10.1371/journal.pone.0212390
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