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Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections
Cortical synapse organization supports a range of dynamic states on multiple spatial and temporal scales, from synchronous slow wave activity (SWA), characteristic of deep sleep or anesthesia, to fluctuating, asynchronous activity during wakefulness (AW). Such dynamic diversity poses a challenge for...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664086/ https://www.ncbi.nlm.nih.gov/pubmed/31396058 http://dx.doi.org/10.3389/fnsys.2019.00033 |
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author | Pastorelli, Elena Capone, Cristiano Simula, Francesco Sanchez-Vives, Maria V. Del Giudice, Paolo Mattia, Maurizio Paolucci, Pier Stanislao |
author_facet | Pastorelli, Elena Capone, Cristiano Simula, Francesco Sanchez-Vives, Maria V. Del Giudice, Paolo Mattia, Maurizio Paolucci, Pier Stanislao |
author_sort | Pastorelli, Elena |
collection | PubMed |
description | Cortical synapse organization supports a range of dynamic states on multiple spatial and temporal scales, from synchronous slow wave activity (SWA), characteristic of deep sleep or anesthesia, to fluctuating, asynchronous activity during wakefulness (AW). Such dynamic diversity poses a challenge for producing efficient large-scale simulations that embody realistic metaphors of short- and long-range synaptic connectivity. In fact, during SWA and AW different spatial extents of the cortical tissue are active in a given timespan and at different firing rates, which implies a wide variety of loads of local computation and communication. A balanced evaluation of simulation performance and robustness should therefore include tests of a variety of cortical dynamic states. Here, we demonstrate performance scaling of our proprietary Distributed and Plastic Spiking Neural Networks (DPSNN) simulation engine in both SWA and AW for bidimensional grids of neural populations, which reflects the modular organization of the cortex. We explored networks up to 192 × 192 modules, each composed of 1,250 integrate-and-fire neurons with spike-frequency adaptation, and exponentially decaying inter-modular synaptic connectivity with varying spatial decay constant. For the largest networks the total number of synapses was over 70 billion. The execution platform included up to 64 dual-socket nodes, each socket mounting 8 Intel Xeon Haswell processor cores @ 2.40 GHz clock rate. Network initialization time, memory usage, and execution time showed good scaling performances from 1 to 1,024 processes, implemented using the standard Message Passing Interface (MPI) protocol. We achieved simulation speeds of between 2.3 × 10(9) and 4.1 × 10(9) synaptic events per second for both cortical states in the explored range of inter-modular interconnections. |
format | Online Article Text |
id | pubmed-6664086 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66640862019-08-08 Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections Pastorelli, Elena Capone, Cristiano Simula, Francesco Sanchez-Vives, Maria V. Del Giudice, Paolo Mattia, Maurizio Paolucci, Pier Stanislao Front Syst Neurosci Neuroscience Cortical synapse organization supports a range of dynamic states on multiple spatial and temporal scales, from synchronous slow wave activity (SWA), characteristic of deep sleep or anesthesia, to fluctuating, asynchronous activity during wakefulness (AW). Such dynamic diversity poses a challenge for producing efficient large-scale simulations that embody realistic metaphors of short- and long-range synaptic connectivity. In fact, during SWA and AW different spatial extents of the cortical tissue are active in a given timespan and at different firing rates, which implies a wide variety of loads of local computation and communication. A balanced evaluation of simulation performance and robustness should therefore include tests of a variety of cortical dynamic states. Here, we demonstrate performance scaling of our proprietary Distributed and Plastic Spiking Neural Networks (DPSNN) simulation engine in both SWA and AW for bidimensional grids of neural populations, which reflects the modular organization of the cortex. We explored networks up to 192 × 192 modules, each composed of 1,250 integrate-and-fire neurons with spike-frequency adaptation, and exponentially decaying inter-modular synaptic connectivity with varying spatial decay constant. For the largest networks the total number of synapses was over 70 billion. The execution platform included up to 64 dual-socket nodes, each socket mounting 8 Intel Xeon Haswell processor cores @ 2.40 GHz clock rate. Network initialization time, memory usage, and execution time showed good scaling performances from 1 to 1,024 processes, implemented using the standard Message Passing Interface (MPI) protocol. We achieved simulation speeds of between 2.3 × 10(9) and 4.1 × 10(9) synaptic events per second for both cortical states in the explored range of inter-modular interconnections. Frontiers Media S.A. 2019-07-23 /pmc/articles/PMC6664086/ /pubmed/31396058 http://dx.doi.org/10.3389/fnsys.2019.00033 Text en Copyright © 2019 Pastorelli, Capone, Simula, Sanchez-Vives, Del Giudice, Mattia and Paolucci. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Pastorelli, Elena Capone, Cristiano Simula, Francesco Sanchez-Vives, Maria V. Del Giudice, Paolo Mattia, Maurizio Paolucci, Pier Stanislao Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections |
title | Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections |
title_full | Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections |
title_fullStr | Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections |
title_full_unstemmed | Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections |
title_short | Scaling of a Large-Scale Simulation of Synchronous Slow-Wave and Asynchronous Awake-Like Activity of a Cortical Model With Long-Range Interconnections |
title_sort | scaling of a large-scale simulation of synchronous slow-wave and asynchronous awake-like activity of a cortical model with long-range interconnections |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664086/ https://www.ncbi.nlm.nih.gov/pubmed/31396058 http://dx.doi.org/10.3389/fnsys.2019.00033 |
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