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Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy

The concept of resilience has become popular in many disciplines far beyond its original use in the field of ecology. Despite of its wide use, it has received different definitions not always coincident. Such ambiguity is still more evident in its quantitative characterization. Most of the available...

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Autores principales: Ginebreda, Antoni, Sabater-Liesa, Laia, Barceló, Damià
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664095/
https://www.ncbi.nlm.nih.gov/pubmed/31384567
http://dx.doi.org/10.1016/j.mex.2019.07.020
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author Ginebreda, Antoni
Sabater-Liesa, Laia
Barceló, Damià
author_facet Ginebreda, Antoni
Sabater-Liesa, Laia
Barceló, Damià
author_sort Ginebreda, Antoni
collection PubMed
description The concept of resilience has become popular in many disciplines far beyond its original use in the field of ecology. Despite of its wide use, it has received different definitions not always coincident. Such ambiguity is still more evident in its quantitative characterization. Most of the available methods are heavily context dependent and often difficult to apply in the practice. Here, we propose to define and calculate resilience starting from the data matrices resulting from multivariate measurements of different biological metrics. • The resilience between two field scenarios (each one characterized by their corresponding datasets) can be conveniently captured as the difference between its respective data complexities. • Complexity is quantified by means of the entropy associated to the spectral distribution of the singular values of each data matrix. • The method proposed has been illustrated with a case study in which the resilience of a river (Ebro River, NE Spain) is calculated comparing six biological metrics associated to the phytoplankton, upstream and downstream to a series of large reservoirs that alter the natural river flow regime.
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spelling pubmed-66640952019-08-05 Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy Ginebreda, Antoni Sabater-Liesa, Laia Barceló, Damià MethodsX Environmental Science The concept of resilience has become popular in many disciplines far beyond its original use in the field of ecology. Despite of its wide use, it has received different definitions not always coincident. Such ambiguity is still more evident in its quantitative characterization. Most of the available methods are heavily context dependent and often difficult to apply in the practice. Here, we propose to define and calculate resilience starting from the data matrices resulting from multivariate measurements of different biological metrics. • The resilience between two field scenarios (each one characterized by their corresponding datasets) can be conveniently captured as the difference between its respective data complexities. • Complexity is quantified by means of the entropy associated to the spectral distribution of the singular values of each data matrix. • The method proposed has been illustrated with a case study in which the resilience of a river (Ebro River, NE Spain) is calculated comparing six biological metrics associated to the phytoplankton, upstream and downstream to a series of large reservoirs that alter the natural river flow regime. Elsevier 2019-07-19 /pmc/articles/PMC6664095/ /pubmed/31384567 http://dx.doi.org/10.1016/j.mex.2019.07.020 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Environmental Science
Ginebreda, Antoni
Sabater-Liesa, Laia
Barceló, Damià
Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
title Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
title_full Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
title_fullStr Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
title_full_unstemmed Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
title_short Quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
title_sort quantification of ecological complexity and resilience from multivariate biological metrics datasets using singular value decomposition entropy
topic Environmental Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664095/
https://www.ncbi.nlm.nih.gov/pubmed/31384567
http://dx.doi.org/10.1016/j.mex.2019.07.020
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