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Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias

Blue tilapia (Oreochromis aureus) has been an economically important fish in Asian countries. It can grow and reproduce in both freshwater and brackish water conditions, whereas it is also considered as a significant invasive species around the world. This species has been widely used as the hybridi...

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Autores principales: Bian, Chao, Li, Jia, Lin, Xueqiang, Chen, Xiyang, Yi, Yunhai, You, Xinxin, Zhang, Yiping, Lv, Yunyun, Shi, Qiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6669741/
https://www.ncbi.nlm.nih.gov/pubmed/31261751
http://dx.doi.org/10.3390/md17070386
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author Bian, Chao
Li, Jia
Lin, Xueqiang
Chen, Xiyang
Yi, Yunhai
You, Xinxin
Zhang, Yiping
Lv, Yunyun
Shi, Qiong
author_facet Bian, Chao
Li, Jia
Lin, Xueqiang
Chen, Xiyang
Yi, Yunhai
You, Xinxin
Zhang, Yiping
Lv, Yunyun
Shi, Qiong
author_sort Bian, Chao
collection PubMed
description Blue tilapia (Oreochromis aureus) has been an economically important fish in Asian countries. It can grow and reproduce in both freshwater and brackish water conditions, whereas it is also considered as a significant invasive species around the world. This species has been widely used as the hybridization parent(s) for tilapia breeding with a major aim to produce novel strains. However, available genomic resources are still limited for this important tilapia species. Here, we for the first time sequenced and assembled a draft genome for a seawater cultured blue tilapia (0.92 Gb), with 97.8% completeness and a scaffold N50 of 1.1 Mb, which suggests a relatively high quality of this genome assembly. We also predicted 23,117 protein-coding genes in the blue tilapia genome. Comparisons of predicted antimicrobial peptides between the blue tilapia and its close relative Nile tilapia proved that these immunological genes are highly similar with a genome-wide scattering distribution. As a valuable genetic resource, our blue tilapia genome assembly will benefit for biomedical researches and practical molecular breeding for high resistance to various diseases, which have been a critical problem in the aquaculture of tilapias.
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spelling pubmed-66697412019-08-08 Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias Bian, Chao Li, Jia Lin, Xueqiang Chen, Xiyang Yi, Yunhai You, Xinxin Zhang, Yiping Lv, Yunyun Shi, Qiong Mar Drugs Article Blue tilapia (Oreochromis aureus) has been an economically important fish in Asian countries. It can grow and reproduce in both freshwater and brackish water conditions, whereas it is also considered as a significant invasive species around the world. This species has been widely used as the hybridization parent(s) for tilapia breeding with a major aim to produce novel strains. However, available genomic resources are still limited for this important tilapia species. Here, we for the first time sequenced and assembled a draft genome for a seawater cultured blue tilapia (0.92 Gb), with 97.8% completeness and a scaffold N50 of 1.1 Mb, which suggests a relatively high quality of this genome assembly. We also predicted 23,117 protein-coding genes in the blue tilapia genome. Comparisons of predicted antimicrobial peptides between the blue tilapia and its close relative Nile tilapia proved that these immunological genes are highly similar with a genome-wide scattering distribution. As a valuable genetic resource, our blue tilapia genome assembly will benefit for biomedical researches and practical molecular breeding for high resistance to various diseases, which have been a critical problem in the aquaculture of tilapias. MDPI 2019-06-28 /pmc/articles/PMC6669741/ /pubmed/31261751 http://dx.doi.org/10.3390/md17070386 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bian, Chao
Li, Jia
Lin, Xueqiang
Chen, Xiyang
Yi, Yunhai
You, Xinxin
Zhang, Yiping
Lv, Yunyun
Shi, Qiong
Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
title Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
title_full Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
title_fullStr Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
title_full_unstemmed Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
title_short Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
title_sort whole genome sequencing of the blue tilapia (oreochromis aureus) provides a valuable genetic resource for biomedical research on tilapias
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6669741/
https://www.ncbi.nlm.nih.gov/pubmed/31261751
http://dx.doi.org/10.3390/md17070386
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