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Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis

Sepsis is a severe disease frequently occurred in the Intenisive Care Unit (ICU), which has a very high morbidity and mortality, especially in patients aged over 65 years. Owing to the aging effect and the ensuing deterioration of body function, the elder patients may have atypical responses to seps...

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Autores principales: Xu, Dingqiao, Liao, Shanting, Li, Pei, Zhang, Qian, Lv, Yan, Fu, Xiaowei, Yang, Minghua, Wang, Junsong, Kong, Lingyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JKL International LLC 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6675524/
https://www.ncbi.nlm.nih.gov/pubmed/31440390
http://dx.doi.org/10.14336/AD.2018.1027
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author Xu, Dingqiao
Liao, Shanting
Li, Pei
Zhang, Qian
Lv, Yan
Fu, Xiaowei
Yang, Minghua
Wang, Junsong
Kong, Lingyi
author_facet Xu, Dingqiao
Liao, Shanting
Li, Pei
Zhang, Qian
Lv, Yan
Fu, Xiaowei
Yang, Minghua
Wang, Junsong
Kong, Lingyi
author_sort Xu, Dingqiao
collection PubMed
description Sepsis is a severe disease frequently occurred in the Intenisive Care Unit (ICU), which has a very high morbidity and mortality, especially in patients aged over 65 years. Owing to the aging effect and the ensuing deterioration of body function, the elder patients may have atypical responses to sepsis. Diagnosis and pathogenesis of sepsis in this population are thus difficult, which hindered effective treatment and management in clinic. To investigated age effects on sepsis, 158 elderly septic patients and 71 non-septic elderly participants were enrolled, and their plasma samples were collected for transcriptomics (RNA-seq) and metabolomics (NMR and GC-MS) analyses, which are both increasingly being utilized to discover key molecular changes and potential biomarkers for various diseases. Protein-protein interaction (PPI) analysis was subsequently performed to assist cross-platform integration. Real time polymerase chain reaction (RT-PCR) was used for validation of RNA-seq results. For further understanding of the mechanisms, cecal ligation and puncture (CLP) experiment was performed both in young and middle-aged rats, which were subjected to NMR-based metabolomics study and validated for several key inflammation pathways by western blot. Comprehensive analysis of data from the two omics approaches provides a systematic perspective on dysregulated pathways that could facilitate the development of therapy and biomarkers for elderly sepsis. Additionally, the metabolites of lactate, arginine, histamine, tyrosine, glutamate and glucose were shown to be highly specific and sensitive in distinguishing septic patients from healthy controls. Significant increases of arginine, trimethylamine N-oxide and allantoin characterized elderly patient incurred sepsis. Further analytical and biological validations in different subpopulations of septic patients should be carried out, allowing accurate diagnostics and precise treatment of sepsis in clinic.
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spelling pubmed-66755242019-08-22 Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis Xu, Dingqiao Liao, Shanting Li, Pei Zhang, Qian Lv, Yan Fu, Xiaowei Yang, Minghua Wang, Junsong Kong, Lingyi Aging Dis Orginal Article Sepsis is a severe disease frequently occurred in the Intenisive Care Unit (ICU), which has a very high morbidity and mortality, especially in patients aged over 65 years. Owing to the aging effect and the ensuing deterioration of body function, the elder patients may have atypical responses to sepsis. Diagnosis and pathogenesis of sepsis in this population are thus difficult, which hindered effective treatment and management in clinic. To investigated age effects on sepsis, 158 elderly septic patients and 71 non-septic elderly participants were enrolled, and their plasma samples were collected for transcriptomics (RNA-seq) and metabolomics (NMR and GC-MS) analyses, which are both increasingly being utilized to discover key molecular changes and potential biomarkers for various diseases. Protein-protein interaction (PPI) analysis was subsequently performed to assist cross-platform integration. Real time polymerase chain reaction (RT-PCR) was used for validation of RNA-seq results. For further understanding of the mechanisms, cecal ligation and puncture (CLP) experiment was performed both in young and middle-aged rats, which were subjected to NMR-based metabolomics study and validated for several key inflammation pathways by western blot. Comprehensive analysis of data from the two omics approaches provides a systematic perspective on dysregulated pathways that could facilitate the development of therapy and biomarkers for elderly sepsis. Additionally, the metabolites of lactate, arginine, histamine, tyrosine, glutamate and glucose were shown to be highly specific and sensitive in distinguishing septic patients from healthy controls. Significant increases of arginine, trimethylamine N-oxide and allantoin characterized elderly patient incurred sepsis. Further analytical and biological validations in different subpopulations of septic patients should be carried out, allowing accurate diagnostics and precise treatment of sepsis in clinic. JKL International LLC 2019-08-01 /pmc/articles/PMC6675524/ /pubmed/31440390 http://dx.doi.org/10.14336/AD.2018.1027 Text en Copyright: © 2019 Xu et al. http://creativecommons.org/licenses/by/2.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Orginal Article
Xu, Dingqiao
Liao, Shanting
Li, Pei
Zhang, Qian
Lv, Yan
Fu, Xiaowei
Yang, Minghua
Wang, Junsong
Kong, Lingyi
Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis
title Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis
title_full Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis
title_fullStr Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis
title_full_unstemmed Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis
title_short Metabolomics Coupled with Transcriptomics Approach Deciphering Age Relevance in Sepsis
title_sort metabolomics coupled with transcriptomics approach deciphering age relevance in sepsis
topic Orginal Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6675524/
https://www.ncbi.nlm.nih.gov/pubmed/31440390
http://dx.doi.org/10.14336/AD.2018.1027
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