Cargando…

A case study in the functional consequences of scaling the sizes of realistic cortical models

Neuroscience models come in a wide range of scales and specificity, from mean-field rate models to large-scale networks of spiking neurons. There are potential trade-offs between simplicity and realism, versatility and computational speed. This paper is about large-scale cortical network models, and...

Descripción completa

Detalles Bibliográficos
Autores principales: Joglekar, Madhura R., Chariker, Logan, Shapley, Robert, Young, Lai-Sang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6677387/
https://www.ncbi.nlm.nih.gov/pubmed/31335880
http://dx.doi.org/10.1371/journal.pcbi.1007198
_version_ 1783440912242704384
author Joglekar, Madhura R.
Chariker, Logan
Shapley, Robert
Young, Lai-Sang
author_facet Joglekar, Madhura R.
Chariker, Logan
Shapley, Robert
Young, Lai-Sang
author_sort Joglekar, Madhura R.
collection PubMed
description Neuroscience models come in a wide range of scales and specificity, from mean-field rate models to large-scale networks of spiking neurons. There are potential trade-offs between simplicity and realism, versatility and computational speed. This paper is about large-scale cortical network models, and the question we address is one of scalability: would scaling down cell density impact a network’s ability to reproduce cortical dynamics and function? We investigated this problem using a previously constructed realistic model of the monkey visual cortex that is true to size. Reducing cell density gradually up to 50-fold, we studied changes in model behavior. Size reduction without parameter adjustment was catastrophic. Surprisingly, relatively minor compensation in synaptic weights guided by a theoretical algorithm restored mean firing rates and basic function such as orientation selectivity to models 10-20 times smaller than the real cortex. Not all was normal in the reduced model cortices: intracellular dynamics acquired a character different from that of real neurons, and while the ability to relay feedforward inputs remained intact, reduced models showed signs of deficiency in functions that required dynamical interaction among cortical neurons. These findings are not confined to models of the visual cortex, and modelers should be aware of potential issues that accompany size reduction. Broader implications of this study include the importance of homeostatic maintenance of firing rates, and the functional consequences of feedforward versus recurrent dynamics, ideas that may shed light on other species and on systems suffering cell loss.
format Online
Article
Text
id pubmed-6677387
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-66773872019-08-05 A case study in the functional consequences of scaling the sizes of realistic cortical models Joglekar, Madhura R. Chariker, Logan Shapley, Robert Young, Lai-Sang PLoS Comput Biol Research Article Neuroscience models come in a wide range of scales and specificity, from mean-field rate models to large-scale networks of spiking neurons. There are potential trade-offs between simplicity and realism, versatility and computational speed. This paper is about large-scale cortical network models, and the question we address is one of scalability: would scaling down cell density impact a network’s ability to reproduce cortical dynamics and function? We investigated this problem using a previously constructed realistic model of the monkey visual cortex that is true to size. Reducing cell density gradually up to 50-fold, we studied changes in model behavior. Size reduction without parameter adjustment was catastrophic. Surprisingly, relatively minor compensation in synaptic weights guided by a theoretical algorithm restored mean firing rates and basic function such as orientation selectivity to models 10-20 times smaller than the real cortex. Not all was normal in the reduced model cortices: intracellular dynamics acquired a character different from that of real neurons, and while the ability to relay feedforward inputs remained intact, reduced models showed signs of deficiency in functions that required dynamical interaction among cortical neurons. These findings are not confined to models of the visual cortex, and modelers should be aware of potential issues that accompany size reduction. Broader implications of this study include the importance of homeostatic maintenance of firing rates, and the functional consequences of feedforward versus recurrent dynamics, ideas that may shed light on other species and on systems suffering cell loss. Public Library of Science 2019-07-23 /pmc/articles/PMC6677387/ /pubmed/31335880 http://dx.doi.org/10.1371/journal.pcbi.1007198 Text en © 2019 Joglekar et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Joglekar, Madhura R.
Chariker, Logan
Shapley, Robert
Young, Lai-Sang
A case study in the functional consequences of scaling the sizes of realistic cortical models
title A case study in the functional consequences of scaling the sizes of realistic cortical models
title_full A case study in the functional consequences of scaling the sizes of realistic cortical models
title_fullStr A case study in the functional consequences of scaling the sizes of realistic cortical models
title_full_unstemmed A case study in the functional consequences of scaling the sizes of realistic cortical models
title_short A case study in the functional consequences of scaling the sizes of realistic cortical models
title_sort case study in the functional consequences of scaling the sizes of realistic cortical models
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6677387/
https://www.ncbi.nlm.nih.gov/pubmed/31335880
http://dx.doi.org/10.1371/journal.pcbi.1007198
work_keys_str_mv AT joglekarmadhurar acasestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT charikerlogan acasestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT shapleyrobert acasestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT younglaisang acasestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT joglekarmadhurar casestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT charikerlogan casestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT shapleyrobert casestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels
AT younglaisang casestudyinthefunctionalconsequencesofscalingthesizesofrealisticcorticalmodels