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MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships
Many important exposure–response relationships, such as diet and weight, can be influenced by intermediates, such as the gut microbiome. Understanding the role of these intermediates, the mediators, is important in refining cause–effect theories and discovering additional medical interventions (e.g....
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6679421/ https://www.ncbi.nlm.nih.gov/pubmed/31336807 http://dx.doi.org/10.3390/genes10070524 |
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author | Hamidi, Bashir Wallace, Kristin Alekseyenko, Alexander V. |
author_facet | Hamidi, Bashir Wallace, Kristin Alekseyenko, Alexander V. |
author_sort | Hamidi, Bashir |
collection | PubMed |
description | Many important exposure–response relationships, such as diet and weight, can be influenced by intermediates, such as the gut microbiome. Understanding the role of these intermediates, the mediators, is important in refining cause–effect theories and discovering additional medical interventions (e.g., probiotics, prebiotics). Mediation analysis has been at the heart of behavioral health research, rapidly gaining popularity with the biomedical sciences in the last decade. A specific analytic challenge is being able to incorporate an entire ’omics assay as a mediator. To address this challenge, we propose a hypothesis testing framework for multivariate omnibus distance mediation analysis (MODIMA). We use the power of energy statistics, such as partial distance correlation, to allow for analysis of multivariate exposure–mediator–response triples. Our simulation results demonstrate the favorable statistical properties of our approach relative to the available alternatives. Finally, we demonstrate the application of the proposed methods in two previously published microbiome datasets. Our framework adds a new tool to the toolbox of approaches to the integration of ‘omics big data. |
format | Online Article Text |
id | pubmed-6679421 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-66794212019-08-19 MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships Hamidi, Bashir Wallace, Kristin Alekseyenko, Alexander V. Genes (Basel) Article Many important exposure–response relationships, such as diet and weight, can be influenced by intermediates, such as the gut microbiome. Understanding the role of these intermediates, the mediators, is important in refining cause–effect theories and discovering additional medical interventions (e.g., probiotics, prebiotics). Mediation analysis has been at the heart of behavioral health research, rapidly gaining popularity with the biomedical sciences in the last decade. A specific analytic challenge is being able to incorporate an entire ’omics assay as a mediator. To address this challenge, we propose a hypothesis testing framework for multivariate omnibus distance mediation analysis (MODIMA). We use the power of energy statistics, such as partial distance correlation, to allow for analysis of multivariate exposure–mediator–response triples. Our simulation results demonstrate the favorable statistical properties of our approach relative to the available alternatives. Finally, we demonstrate the application of the proposed methods in two previously published microbiome datasets. Our framework adds a new tool to the toolbox of approaches to the integration of ‘omics big data. MDPI 2019-07-11 /pmc/articles/PMC6679421/ /pubmed/31336807 http://dx.doi.org/10.3390/genes10070524 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hamidi, Bashir Wallace, Kristin Alekseyenko, Alexander V. MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships |
title | MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships |
title_full | MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships |
title_fullStr | MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships |
title_full_unstemmed | MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships |
title_short | MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure–Mediator–Response Relationships |
title_sort | modima, a method for multivariate omnibus distance mediation analysis, allows for integration of multivariate exposure–mediator–response relationships |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6679421/ https://www.ncbi.nlm.nih.gov/pubmed/31336807 http://dx.doi.org/10.3390/genes10070524 |
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