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Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer
BACKGROUND: Rho GTPase-activating protein 10 (ARHGAP10), which catalyzes the conversion of active Rho GTPase to the inactive form, is downregulated in some cancers. However, little is known about ARHGAP10 in breast cancer. METHODS: The transcriptional expression level of ARHGAP10 in breast cancer wa...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6679923/ https://www.ncbi.nlm.nih.gov/pubmed/31396458 http://dx.doi.org/10.7717/peerj.7431 |
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author | Li, Yujing Zeng, Beilei Li, Yunhai Zhang, Chong Ren, Guosheng |
author_facet | Li, Yujing Zeng, Beilei Li, Yunhai Zhang, Chong Ren, Guosheng |
author_sort | Li, Yujing |
collection | PubMed |
description | BACKGROUND: Rho GTPase-activating protein 10 (ARHGAP10), which catalyzes the conversion of active Rho GTPase to the inactive form, is downregulated in some cancers. However, little is known about ARHGAP10 in breast cancer. METHODS: The transcriptional expression level of ARHGAP10 in breast cancer was analyzed with the data downloaded from The Cancer Genome Atlas (TCGA) and Oncomine, then verified by reverse-transcription quantitative polymerase chain reaction (RT-qPCR) in 30 pairs of breast cancer tissues and the corresponding adjacent normal tissues. ARHGAP10 protein expression was examined by immunohistochemistry (IHC) in 190 breast cancer and 30 corresponding adjacent normal breast tissue samples. The associations between ARHGAP10 expression and clinicopathological characteristics of patients were analyzed, and Kaplan–Meier Plotter was used to assess the relationship between ARHGAP10 and relapse-free survival (RFS). Different expression levels of ARHGAP10 in response to chemotherapy agents were determined by GEO2R online tool. The potential biological functions of ARHGAP10 were analyzed by Gene Set Enrichment Analysis (GSEA) using data downloaded from TCGA. RESULTS: ARHGAP10 mRNA and protein expression was lower in breast cancer tissues than in adjacent normal tissues. Low expression of ARHGAP10 was associated with advanced clinical TNM (cTNM) stage (p(b) = 0.001) and high Ki-67 index (p = 0.015). Low expression of ARHGAP10 indicated worse RFS (p = 0.0015) and a poor response to chemotherapy (p = 0.006). GSEA results showed that ARHGAP10 was involved in signaling pathways including protein export, nucleotide excision repair, base excision repair, focal adhesion, JAK-STAT pathway and the actin cytoskeleton. |
format | Online Article Text |
id | pubmed-6679923 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66799232019-08-08 Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer Li, Yujing Zeng, Beilei Li, Yunhai Zhang, Chong Ren, Guosheng PeerJ Bioinformatics BACKGROUND: Rho GTPase-activating protein 10 (ARHGAP10), which catalyzes the conversion of active Rho GTPase to the inactive form, is downregulated in some cancers. However, little is known about ARHGAP10 in breast cancer. METHODS: The transcriptional expression level of ARHGAP10 in breast cancer was analyzed with the data downloaded from The Cancer Genome Atlas (TCGA) and Oncomine, then verified by reverse-transcription quantitative polymerase chain reaction (RT-qPCR) in 30 pairs of breast cancer tissues and the corresponding adjacent normal tissues. ARHGAP10 protein expression was examined by immunohistochemistry (IHC) in 190 breast cancer and 30 corresponding adjacent normal breast tissue samples. The associations between ARHGAP10 expression and clinicopathological characteristics of patients were analyzed, and Kaplan–Meier Plotter was used to assess the relationship between ARHGAP10 and relapse-free survival (RFS). Different expression levels of ARHGAP10 in response to chemotherapy agents were determined by GEO2R online tool. The potential biological functions of ARHGAP10 were analyzed by Gene Set Enrichment Analysis (GSEA) using data downloaded from TCGA. RESULTS: ARHGAP10 mRNA and protein expression was lower in breast cancer tissues than in adjacent normal tissues. Low expression of ARHGAP10 was associated with advanced clinical TNM (cTNM) stage (p(b) = 0.001) and high Ki-67 index (p = 0.015). Low expression of ARHGAP10 indicated worse RFS (p = 0.0015) and a poor response to chemotherapy (p = 0.006). GSEA results showed that ARHGAP10 was involved in signaling pathways including protein export, nucleotide excision repair, base excision repair, focal adhesion, JAK-STAT pathway and the actin cytoskeleton. PeerJ Inc. 2019-08-01 /pmc/articles/PMC6679923/ /pubmed/31396458 http://dx.doi.org/10.7717/peerj.7431 Text en ©2019 Li et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Li, Yujing Zeng, Beilei Li, Yunhai Zhang, Chong Ren, Guosheng Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer |
title | Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer |
title_full | Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer |
title_fullStr | Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer |
title_full_unstemmed | Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer |
title_short | Downregulated expression of ARHGAP10 correlates with advanced stage and high Ki-67 index in breast cancer |
title_sort | downregulated expression of arhgap10 correlates with advanced stage and high ki-67 index in breast cancer |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6679923/ https://www.ncbi.nlm.nih.gov/pubmed/31396458 http://dx.doi.org/10.7717/peerj.7431 |
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