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Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes

The use of DNA as a nanoscale construction material has been a rapidly developing field since the 1980s, in particular since the introduction of scaffolded DNA origami in 2006. Although software is available for DNA origami design, the user is generally limited to architectures where finding the sca...

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Autores principales: Benson, Erik, Mohammed, Abdulmelik, Bosco, Alessandro, Teixeira, Ana I., Orponen, Pekka, Högberg, Björn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6680348/
https://www.ncbi.nlm.nih.gov/pubmed/27304204
http://dx.doi.org/10.1002/anie.201602446
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author Benson, Erik
Mohammed, Abdulmelik
Bosco, Alessandro
Teixeira, Ana I.
Orponen, Pekka
Högberg, Björn
author_facet Benson, Erik
Mohammed, Abdulmelik
Bosco, Alessandro
Teixeira, Ana I.
Orponen, Pekka
Högberg, Björn
author_sort Benson, Erik
collection PubMed
description The use of DNA as a nanoscale construction material has been a rapidly developing field since the 1980s, in particular since the introduction of scaffolded DNA origami in 2006. Although software is available for DNA origami design, the user is generally limited to architectures where finding the scaffold path through the object is trivial. Herein, we demonstrate the automated conversion of arbitrary two‐dimensional sheets in the form of digital meshes into scaffolded DNA nanostructures. We investigate the properties of DNA meshes based on three different internal frameworks in standard folding buffer and physiological salt buffers. We then employ the triangulated internal framework and produce four 2D structures with complex outlines and internal features. We demonstrate that this highly automated technique is capable of producing complex DNA nanostructures that fold with high yield to their programmed configurations, covering around 70 % more surface area than classic origami flat sheets.
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spelling pubmed-66803482019-08-09 Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes Benson, Erik Mohammed, Abdulmelik Bosco, Alessandro Teixeira, Ana I. Orponen, Pekka Högberg, Björn Angew Chem Int Ed Engl Communications The use of DNA as a nanoscale construction material has been a rapidly developing field since the 1980s, in particular since the introduction of scaffolded DNA origami in 2006. Although software is available for DNA origami design, the user is generally limited to architectures where finding the scaffold path through the object is trivial. Herein, we demonstrate the automated conversion of arbitrary two‐dimensional sheets in the form of digital meshes into scaffolded DNA nanostructures. We investigate the properties of DNA meshes based on three different internal frameworks in standard folding buffer and physiological salt buffers. We then employ the triangulated internal framework and produce four 2D structures with complex outlines and internal features. We demonstrate that this highly automated technique is capable of producing complex DNA nanostructures that fold with high yield to their programmed configurations, covering around 70 % more surface area than classic origami flat sheets. John Wiley and Sons Inc. 2016-06-15 2016-07-25 /pmc/articles/PMC6680348/ /pubmed/27304204 http://dx.doi.org/10.1002/anie.201602446 Text en © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Communications
Benson, Erik
Mohammed, Abdulmelik
Bosco, Alessandro
Teixeira, Ana I.
Orponen, Pekka
Högberg, Björn
Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes
title Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes
title_full Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes
title_fullStr Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes
title_full_unstemmed Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes
title_short Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes
title_sort computer‐aided production of scaffolded dna nanostructures from flat sheet meshes
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6680348/
https://www.ncbi.nlm.nih.gov/pubmed/27304204
http://dx.doi.org/10.1002/anie.201602446
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