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Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data

Analysis of spike and local field potential (LFP) data is an essential part of neuroscientific research. Today there exist many open-source toolboxes for spike and LFP data analysis implementing various functionality. Here we aim to provide a practical guidance for neuroscientists in the choice of a...

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Autores principales: Unakafova, Valentina A., Gail, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6682703/
https://www.ncbi.nlm.nih.gov/pubmed/31417389
http://dx.doi.org/10.3389/fninf.2019.00057
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author Unakafova, Valentina A.
Gail, Alexander
author_facet Unakafova, Valentina A.
Gail, Alexander
author_sort Unakafova, Valentina A.
collection PubMed
description Analysis of spike and local field potential (LFP) data is an essential part of neuroscientific research. Today there exist many open-source toolboxes for spike and LFP data analysis implementing various functionality. Here we aim to provide a practical guidance for neuroscientists in the choice of an open-source toolbox best satisfying their needs. We overview major open-source toolboxes for spike and LFP data analysis as well as toolboxes with tools for connectivity analysis, dimensionality reduction and generalized linear modeling. We focus on comparing toolboxes functionality, statistical and visualization tools, documentation and support quality. To give a better insight, we compare and illustrate functionality of the toolboxes on open-access dataset or simulated data and make corresponding MATLAB scripts publicly available.
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spelling pubmed-66827032019-08-15 Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data Unakafova, Valentina A. Gail, Alexander Front Neuroinform Neuroscience Analysis of spike and local field potential (LFP) data is an essential part of neuroscientific research. Today there exist many open-source toolboxes for spike and LFP data analysis implementing various functionality. Here we aim to provide a practical guidance for neuroscientists in the choice of an open-source toolbox best satisfying their needs. We overview major open-source toolboxes for spike and LFP data analysis as well as toolboxes with tools for connectivity analysis, dimensionality reduction and generalized linear modeling. We focus on comparing toolboxes functionality, statistical and visualization tools, documentation and support quality. To give a better insight, we compare and illustrate functionality of the toolboxes on open-access dataset or simulated data and make corresponding MATLAB scripts publicly available. Frontiers Media S.A. 2019-07-30 /pmc/articles/PMC6682703/ /pubmed/31417389 http://dx.doi.org/10.3389/fninf.2019.00057 Text en Copyright © 2019 Unakafova and Gail. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Unakafova, Valentina A.
Gail, Alexander
Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
title Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
title_full Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
title_fullStr Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
title_full_unstemmed Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
title_short Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
title_sort comparing open-source toolboxes for processing and analysis of spike and local field potentials data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6682703/
https://www.ncbi.nlm.nih.gov/pubmed/31417389
http://dx.doi.org/10.3389/fninf.2019.00057
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