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Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder
REM Behavior Disorder (RBD) is now recognized as the prodromal stage of α-synucleinopathies such as Parkinson's disease (PD). In this paper, we describe deep learning models for diagnosis/prognosis derived from a few minutes of eyes-closed resting electroencephalography data (EEG) collected at...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6683849/ https://www.ncbi.nlm.nih.gov/pubmed/31417485 http://dx.doi.org/10.3389/fneur.2019.00806 |
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author | Ruffini, Giulio Ibañez, David Castellano, Marta Dubreuil-Vall, Laura Soria-Frisch, Aureli Postuma, Ron Gagnon, Jean-François Montplaisir, Jacques |
author_facet | Ruffini, Giulio Ibañez, David Castellano, Marta Dubreuil-Vall, Laura Soria-Frisch, Aureli Postuma, Ron Gagnon, Jean-François Montplaisir, Jacques |
author_sort | Ruffini, Giulio |
collection | PubMed |
description | REM Behavior Disorder (RBD) is now recognized as the prodromal stage of α-synucleinopathies such as Parkinson's disease (PD). In this paper, we describe deep learning models for diagnosis/prognosis derived from a few minutes of eyes-closed resting electroencephalography data (EEG) collected at baseline from idiopathic RBD patients (n = 121) and healthy controls (HC, n = 91). A few years after the EEG acquisition (4±2 years), a subset of the RBD patients were eventually diagnosed with either PD (n = 14) or Dementia with Lewy bodies (DLB, n = 13), while the rest remained idiopathic RBD. We describe first a simple deep convolutional neural network (DCNN) with a five-layer architecture combining filtering and pooling, which we train using stacked multi-channel EEG spectrograms from idiopathic patients and healthy controls. We treat the data as in audio or image classification problems where deep networks have proven successful by exploiting invariances and compositional features in the data. For comparison, we study a simple deep recurrent neural network (RNN) model using three stacked Long Short Term Memory network (LSTM) cells or gated-recurrent unit (GRU) cells—with very similar results. The performance of these networks typically reaches 80% (±1%) classification accuracy in the balanced HC vs. PD-conversion classification problem. In particular, using data from the best single EEG channel, we obtain an area under the curve (AUC) of 87% (±1%)—while avoiding spectral feature selection. The trained classifier can also be used to generate synthetic spectrograms using the DeepDream algorithm to study what time-frequency features are relevant for classification. We find these to be bursts in the theta band together with a decrease of bursting in the alpha band in future RBD converters (i.e., converting to PD or DLB in the follow up) relative to HCs. From this first study, we conclude that deep networks may provide a useful tool for the analysis of EEG dynamics even from relatively small datasets, offering physiological insights and enabling the identification of clinically relevant biomarkers. |
format | Online Article Text |
id | pubmed-6683849 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66838492019-08-15 Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder Ruffini, Giulio Ibañez, David Castellano, Marta Dubreuil-Vall, Laura Soria-Frisch, Aureli Postuma, Ron Gagnon, Jean-François Montplaisir, Jacques Front Neurol Neurology REM Behavior Disorder (RBD) is now recognized as the prodromal stage of α-synucleinopathies such as Parkinson's disease (PD). In this paper, we describe deep learning models for diagnosis/prognosis derived from a few minutes of eyes-closed resting electroencephalography data (EEG) collected at baseline from idiopathic RBD patients (n = 121) and healthy controls (HC, n = 91). A few years after the EEG acquisition (4±2 years), a subset of the RBD patients were eventually diagnosed with either PD (n = 14) or Dementia with Lewy bodies (DLB, n = 13), while the rest remained idiopathic RBD. We describe first a simple deep convolutional neural network (DCNN) with a five-layer architecture combining filtering and pooling, which we train using stacked multi-channel EEG spectrograms from idiopathic patients and healthy controls. We treat the data as in audio or image classification problems where deep networks have proven successful by exploiting invariances and compositional features in the data. For comparison, we study a simple deep recurrent neural network (RNN) model using three stacked Long Short Term Memory network (LSTM) cells or gated-recurrent unit (GRU) cells—with very similar results. The performance of these networks typically reaches 80% (±1%) classification accuracy in the balanced HC vs. PD-conversion classification problem. In particular, using data from the best single EEG channel, we obtain an area under the curve (AUC) of 87% (±1%)—while avoiding spectral feature selection. The trained classifier can also be used to generate synthetic spectrograms using the DeepDream algorithm to study what time-frequency features are relevant for classification. We find these to be bursts in the theta band together with a decrease of bursting in the alpha band in future RBD converters (i.e., converting to PD or DLB in the follow up) relative to HCs. From this first study, we conclude that deep networks may provide a useful tool for the analysis of EEG dynamics even from relatively small datasets, offering physiological insights and enabling the identification of clinically relevant biomarkers. Frontiers Media S.A. 2019-07-30 /pmc/articles/PMC6683849/ /pubmed/31417485 http://dx.doi.org/10.3389/fneur.2019.00806 Text en Copyright © 2019 Ruffini, Ibañez, Castellano, Dubreuil-Vall, Soria-Frisch, Postuma, Gagnon and Montplaisir. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Ruffini, Giulio Ibañez, David Castellano, Marta Dubreuil-Vall, Laura Soria-Frisch, Aureli Postuma, Ron Gagnon, Jean-François Montplaisir, Jacques Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder |
title | Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder |
title_full | Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder |
title_fullStr | Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder |
title_full_unstemmed | Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder |
title_short | Deep Learning With EEG Spectrograms in Rapid Eye Movement Behavior Disorder |
title_sort | deep learning with eeg spectrograms in rapid eye movement behavior disorder |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6683849/ https://www.ncbi.nlm.nih.gov/pubmed/31417485 http://dx.doi.org/10.3389/fneur.2019.00806 |
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