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Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
Understanding hydrogen-bonding networks in nanocrystals and microcrystals that are too small for X-ray diffractometry is a challenge. Although electron diffraction (ED) or electron 3D crystallography are applicable to determining the structures of such nanocrystals owing to their strong scattering p...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684599/ https://www.ncbi.nlm.nih.gov/pubmed/31388004 http://dx.doi.org/10.1038/s41467-019-11469-2 |
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author | Guzmán-Afonso, Candelaria Hong, You-lee Colaux, Henri Iijima, Hirofumi Saitow, Akihiro Fukumura, Takuma Aoyama, Yoshitaka Motoki, Souhei Oikawa, Tetsuo Yamazaki, Toshio Yonekura, Koji Nishiyama, Yusuke |
author_facet | Guzmán-Afonso, Candelaria Hong, You-lee Colaux, Henri Iijima, Hirofumi Saitow, Akihiro Fukumura, Takuma Aoyama, Yoshitaka Motoki, Souhei Oikawa, Tetsuo Yamazaki, Toshio Yonekura, Koji Nishiyama, Yusuke |
author_sort | Guzmán-Afonso, Candelaria |
collection | PubMed |
description | Understanding hydrogen-bonding networks in nanocrystals and microcrystals that are too small for X-ray diffractometry is a challenge. Although electron diffraction (ED) or electron 3D crystallography are applicable to determining the structures of such nanocrystals owing to their strong scattering power, these techniques still lead to ambiguities in the hydrogen atom positions and misassignments of atoms with similar atomic numbers such as carbon, nitrogen, and oxygen. Here, we propose a technique combining ED, solid-state NMR (SSNMR), and first-principles quantum calculations to overcome these limitations. The rotational ED method is first used to determine the positions of the non-hydrogen atoms, and SSNMR is then applied to ascertain the hydrogen atom positions and assign the carbon, nitrogen, and oxygen atoms via the NMR signals for (1)H, (13)C, (14)N, and (15)N with the aid of quantum computations. This approach elucidates the hydrogen-bonding networks in l-histidine and cimetidine form B whose structure was previously unknown. |
format | Online Article Text |
id | pubmed-6684599 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66845992019-08-08 Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography Guzmán-Afonso, Candelaria Hong, You-lee Colaux, Henri Iijima, Hirofumi Saitow, Akihiro Fukumura, Takuma Aoyama, Yoshitaka Motoki, Souhei Oikawa, Tetsuo Yamazaki, Toshio Yonekura, Koji Nishiyama, Yusuke Nat Commun Article Understanding hydrogen-bonding networks in nanocrystals and microcrystals that are too small for X-ray diffractometry is a challenge. Although electron diffraction (ED) or electron 3D crystallography are applicable to determining the structures of such nanocrystals owing to their strong scattering power, these techniques still lead to ambiguities in the hydrogen atom positions and misassignments of atoms with similar atomic numbers such as carbon, nitrogen, and oxygen. Here, we propose a technique combining ED, solid-state NMR (SSNMR), and first-principles quantum calculations to overcome these limitations. The rotational ED method is first used to determine the positions of the non-hydrogen atoms, and SSNMR is then applied to ascertain the hydrogen atom positions and assign the carbon, nitrogen, and oxygen atoms via the NMR signals for (1)H, (13)C, (14)N, and (15)N with the aid of quantum computations. This approach elucidates the hydrogen-bonding networks in l-histidine and cimetidine form B whose structure was previously unknown. Nature Publishing Group UK 2019-08-06 /pmc/articles/PMC6684599/ /pubmed/31388004 http://dx.doi.org/10.1038/s41467-019-11469-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Guzmán-Afonso, Candelaria Hong, You-lee Colaux, Henri Iijima, Hirofumi Saitow, Akihiro Fukumura, Takuma Aoyama, Yoshitaka Motoki, Souhei Oikawa, Tetsuo Yamazaki, Toshio Yonekura, Koji Nishiyama, Yusuke Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography |
title | Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography |
title_full | Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography |
title_fullStr | Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography |
title_full_unstemmed | Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography |
title_short | Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography |
title_sort | understanding hydrogen-bonding structures of molecular crystals via electron and nmr nanocrystallography |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684599/ https://www.ncbi.nlm.nih.gov/pubmed/31388004 http://dx.doi.org/10.1038/s41467-019-11469-2 |
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