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Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography

Understanding hydrogen-bonding networks in nanocrystals and microcrystals that are too small for X-ray diffractometry is a challenge. Although electron diffraction (ED) or electron 3D crystallography are applicable to determining the structures of such nanocrystals owing to their strong scattering p...

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Autores principales: Guzmán-Afonso, Candelaria, Hong, You-lee, Colaux, Henri, Iijima, Hirofumi, Saitow, Akihiro, Fukumura, Takuma, Aoyama, Yoshitaka, Motoki, Souhei, Oikawa, Tetsuo, Yamazaki, Toshio, Yonekura, Koji, Nishiyama, Yusuke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684599/
https://www.ncbi.nlm.nih.gov/pubmed/31388004
http://dx.doi.org/10.1038/s41467-019-11469-2
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author Guzmán-Afonso, Candelaria
Hong, You-lee
Colaux, Henri
Iijima, Hirofumi
Saitow, Akihiro
Fukumura, Takuma
Aoyama, Yoshitaka
Motoki, Souhei
Oikawa, Tetsuo
Yamazaki, Toshio
Yonekura, Koji
Nishiyama, Yusuke
author_facet Guzmán-Afonso, Candelaria
Hong, You-lee
Colaux, Henri
Iijima, Hirofumi
Saitow, Akihiro
Fukumura, Takuma
Aoyama, Yoshitaka
Motoki, Souhei
Oikawa, Tetsuo
Yamazaki, Toshio
Yonekura, Koji
Nishiyama, Yusuke
author_sort Guzmán-Afonso, Candelaria
collection PubMed
description Understanding hydrogen-bonding networks in nanocrystals and microcrystals that are too small for X-ray diffractometry is a challenge. Although electron diffraction (ED) or electron 3D crystallography are applicable to determining the structures of such nanocrystals owing to their strong scattering power, these techniques still lead to ambiguities in the hydrogen atom positions and misassignments of atoms with similar atomic numbers such as carbon, nitrogen, and oxygen. Here, we propose a technique combining ED, solid-state NMR (SSNMR), and first-principles quantum calculations to overcome these limitations. The rotational ED method is first used to determine the positions of the non-hydrogen atoms, and SSNMR is then applied to ascertain the hydrogen atom positions and assign the carbon, nitrogen, and oxygen atoms via the NMR signals for (1)H, (13)C, (14)N, and (15)N with the aid of quantum computations. This approach elucidates the hydrogen-bonding networks in l-histidine and cimetidine form B whose structure was previously unknown.
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spelling pubmed-66845992019-08-08 Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography Guzmán-Afonso, Candelaria Hong, You-lee Colaux, Henri Iijima, Hirofumi Saitow, Akihiro Fukumura, Takuma Aoyama, Yoshitaka Motoki, Souhei Oikawa, Tetsuo Yamazaki, Toshio Yonekura, Koji Nishiyama, Yusuke Nat Commun Article Understanding hydrogen-bonding networks in nanocrystals and microcrystals that are too small for X-ray diffractometry is a challenge. Although electron diffraction (ED) or electron 3D crystallography are applicable to determining the structures of such nanocrystals owing to their strong scattering power, these techniques still lead to ambiguities in the hydrogen atom positions and misassignments of atoms with similar atomic numbers such as carbon, nitrogen, and oxygen. Here, we propose a technique combining ED, solid-state NMR (SSNMR), and first-principles quantum calculations to overcome these limitations. The rotational ED method is first used to determine the positions of the non-hydrogen atoms, and SSNMR is then applied to ascertain the hydrogen atom positions and assign the carbon, nitrogen, and oxygen atoms via the NMR signals for (1)H, (13)C, (14)N, and (15)N with the aid of quantum computations. This approach elucidates the hydrogen-bonding networks in l-histidine and cimetidine form B whose structure was previously unknown. Nature Publishing Group UK 2019-08-06 /pmc/articles/PMC6684599/ /pubmed/31388004 http://dx.doi.org/10.1038/s41467-019-11469-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Guzmán-Afonso, Candelaria
Hong, You-lee
Colaux, Henri
Iijima, Hirofumi
Saitow, Akihiro
Fukumura, Takuma
Aoyama, Yoshitaka
Motoki, Souhei
Oikawa, Tetsuo
Yamazaki, Toshio
Yonekura, Koji
Nishiyama, Yusuke
Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
title Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
title_full Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
title_fullStr Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
title_full_unstemmed Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
title_short Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
title_sort understanding hydrogen-bonding structures of molecular crystals via electron and nmr nanocrystallography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684599/
https://www.ncbi.nlm.nih.gov/pubmed/31388004
http://dx.doi.org/10.1038/s41467-019-11469-2
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