Cargando…
DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture
It is critical, but difficult, to catch the small variation in genomic or other kinds of data that differentiates phenotypes or categories. A plethora of data is available, but the information from its genes or elements is spread over arbitrarily, making it challenging to extract relevant details fo...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684600/ https://www.ncbi.nlm.nih.gov/pubmed/31388036 http://dx.doi.org/10.1038/s41598-019-47765-6 |
_version_ | 1783442277720391680 |
---|---|
author | Sharma, Alok Vans, Edwin Shigemizu, Daichi Boroevich, Keith A. Tsunoda, Tatsuhiko |
author_facet | Sharma, Alok Vans, Edwin Shigemizu, Daichi Boroevich, Keith A. Tsunoda, Tatsuhiko |
author_sort | Sharma, Alok |
collection | PubMed |
description | It is critical, but difficult, to catch the small variation in genomic or other kinds of data that differentiates phenotypes or categories. A plethora of data is available, but the information from its genes or elements is spread over arbitrarily, making it challenging to extract relevant details for identification. However, an arrangement of similar genes into clusters makes these differences more accessible and allows for robust identification of hidden mechanisms (e.g. pathways) than dealing with elements individually. Here we propose, DeepInsight, which converts non-image samples into a well-organized image-form. Thereby, the power of convolution neural network (CNN), including GPU utilization, can be realized for non-image samples. Furthermore, DeepInsight enables feature extraction through the application of CNN for non-image samples to seize imperative information and shown promising results. To our knowledge, this is the first work to apply CNN simultaneously on different kinds of non-image datasets: RNA-seq, vowels, text, and artificial. |
format | Online Article Text |
id | pubmed-6684600 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66846002019-08-11 DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture Sharma, Alok Vans, Edwin Shigemizu, Daichi Boroevich, Keith A. Tsunoda, Tatsuhiko Sci Rep Article It is critical, but difficult, to catch the small variation in genomic or other kinds of data that differentiates phenotypes or categories. A plethora of data is available, but the information from its genes or elements is spread over arbitrarily, making it challenging to extract relevant details for identification. However, an arrangement of similar genes into clusters makes these differences more accessible and allows for robust identification of hidden mechanisms (e.g. pathways) than dealing with elements individually. Here we propose, DeepInsight, which converts non-image samples into a well-organized image-form. Thereby, the power of convolution neural network (CNN), including GPU utilization, can be realized for non-image samples. Furthermore, DeepInsight enables feature extraction through the application of CNN for non-image samples to seize imperative information and shown promising results. To our knowledge, this is the first work to apply CNN simultaneously on different kinds of non-image datasets: RNA-seq, vowels, text, and artificial. Nature Publishing Group UK 2019-08-06 /pmc/articles/PMC6684600/ /pubmed/31388036 http://dx.doi.org/10.1038/s41598-019-47765-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Sharma, Alok Vans, Edwin Shigemizu, Daichi Boroevich, Keith A. Tsunoda, Tatsuhiko DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture |
title | DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture |
title_full | DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture |
title_fullStr | DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture |
title_full_unstemmed | DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture |
title_short | DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture |
title_sort | deepinsight: a methodology to transform a non-image data to an image for convolution neural network architecture |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684600/ https://www.ncbi.nlm.nih.gov/pubmed/31388036 http://dx.doi.org/10.1038/s41598-019-47765-6 |
work_keys_str_mv | AT sharmaalok deepinsightamethodologytotransformanonimagedatatoanimageforconvolutionneuralnetworkarchitecture AT vansedwin deepinsightamethodologytotransformanonimagedatatoanimageforconvolutionneuralnetworkarchitecture AT shigemizudaichi deepinsightamethodologytotransformanonimagedatatoanimageforconvolutionneuralnetworkarchitecture AT boroevichkeitha deepinsightamethodologytotransformanonimagedatatoanimageforconvolutionneuralnetworkarchitecture AT tsunodatatsuhiko deepinsightamethodologytotransformanonimagedatatoanimageforconvolutionneuralnetworkarchitecture |