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Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure
Networks are real systems modelled through mathematical objects made up of nodes and links arranged into peculiar and deliberate (or partially deliberate) topologies. Studying these real-world topologies allows for several properties of interest to be revealed. In real networks, nodes are also ident...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684645/ https://www.ncbi.nlm.nih.gov/pubmed/31388045 http://dx.doi.org/10.1038/s41598-019-47717-0 |
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author | Cinelli, Matteo Ferraro, Giovanna Iovanella, Antonio |
author_facet | Cinelli, Matteo Ferraro, Giovanna Iovanella, Antonio |
author_sort | Cinelli, Matteo |
collection | PubMed |
description | Networks are real systems modelled through mathematical objects made up of nodes and links arranged into peculiar and deliberate (or partially deliberate) topologies. Studying these real-world topologies allows for several properties of interest to be revealed. In real networks, nodes are also identified by a certain number of non-structural features or metadata. Given the current possibility of collecting massive quantity of such metadata, it becomes crucial to identify automatically which are the most relevant for the observed structure. We propose a new method that, independently from the network size, is able to not only report the relevance of binary node metadata, but also rank them. Such a method can be applied to networks from any domain, and we apply it in two heterogeneous cases: a temporal network of technology transfer and a protein-protein interaction network. Together with the relevance of node metadata, we investigate the redundancy of these metadata displaying by the results on a Redundancy-Relevance diagram, which is able to highlight the differences among vectors of metadata from both a structural and a non-structural point of view. The obtained results provide insights of a practical nature into the importance of the observed node metadata for the actual network structure. |
format | Online Article Text |
id | pubmed-6684645 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66846452019-08-11 Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure Cinelli, Matteo Ferraro, Giovanna Iovanella, Antonio Sci Rep Article Networks are real systems modelled through mathematical objects made up of nodes and links arranged into peculiar and deliberate (or partially deliberate) topologies. Studying these real-world topologies allows for several properties of interest to be revealed. In real networks, nodes are also identified by a certain number of non-structural features or metadata. Given the current possibility of collecting massive quantity of such metadata, it becomes crucial to identify automatically which are the most relevant for the observed structure. We propose a new method that, independently from the network size, is able to not only report the relevance of binary node metadata, but also rank them. Such a method can be applied to networks from any domain, and we apply it in two heterogeneous cases: a temporal network of technology transfer and a protein-protein interaction network. Together with the relevance of node metadata, we investigate the redundancy of these metadata displaying by the results on a Redundancy-Relevance diagram, which is able to highlight the differences among vectors of metadata from both a structural and a non-structural point of view. The obtained results provide insights of a practical nature into the importance of the observed node metadata for the actual network structure. Nature Publishing Group UK 2019-08-06 /pmc/articles/PMC6684645/ /pubmed/31388045 http://dx.doi.org/10.1038/s41598-019-47717-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Cinelli, Matteo Ferraro, Giovanna Iovanella, Antonio Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
title | Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
title_full | Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
title_fullStr | Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
title_full_unstemmed | Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
title_short | Evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
title_sort | evaluating relevance and redundancy to quantify how binary node metadata interplay with the network structure |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684645/ https://www.ncbi.nlm.nih.gov/pubmed/31388045 http://dx.doi.org/10.1038/s41598-019-47717-0 |
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