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Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability
Clostridium thermocellum is a potent cellulolytic bacterium. C. thermocellum strain PAL5, was derived from strain S14 that was isolated from bagasse paper sludge, possesses higher cellulose-degradation ability than representative strains ATCC27405 and DSM1313. In this work, we determined the draft g...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685675/ https://www.ncbi.nlm.nih.gov/pubmed/31406903 http://dx.doi.org/10.1016/j.dib.2019.104274 |
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author | Nakazono-Nagaoka, Eiko Fujikawa, Takashi Shikata, Ayumi Tachaapaikoon, Chakrit Waeonukul, Rattiya Pason, Patthra Ratanakhanokchai, Khanok Kosugi, Akihiko |
author_facet | Nakazono-Nagaoka, Eiko Fujikawa, Takashi Shikata, Ayumi Tachaapaikoon, Chakrit Waeonukul, Rattiya Pason, Patthra Ratanakhanokchai, Khanok Kosugi, Akihiko |
author_sort | Nakazono-Nagaoka, Eiko |
collection | PubMed |
description | Clostridium thermocellum is a potent cellulolytic bacterium. C. thermocellum strain PAL5, was derived from strain S14 that was isolated from bagasse paper sludge, possesses higher cellulose-degradation ability than representative strains ATCC27405 and DSM1313. In this work, we determined the draft genome sequence of C. thermocellum PAL5. Genomic DNA was used for whole-genome sequencing using the Illumina HiSeq 2500. We obtained 215 contigs of >200 bp (N50, 78,366 bp; mean length, 17,378 bp). The assembled data were subjected to the National Center for Biotechnology Information (NCBI) Prokaryotic Genome Annotation Pipeline, and 3198 protein-coding sequences, 53 tRNA genes, and 4 rRNA genes were identified. The data are accessible at NCBI (the accession number SBHL00000000). Our data resource will facilitate further studies of efficient cellulose-degradation using C. thermocellum. |
format | Online Article Text |
id | pubmed-6685675 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-66856752019-08-12 Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability Nakazono-Nagaoka, Eiko Fujikawa, Takashi Shikata, Ayumi Tachaapaikoon, Chakrit Waeonukul, Rattiya Pason, Patthra Ratanakhanokchai, Khanok Kosugi, Akihiko Data Brief Immunology and Microbiology Clostridium thermocellum is a potent cellulolytic bacterium. C. thermocellum strain PAL5, was derived from strain S14 that was isolated from bagasse paper sludge, possesses higher cellulose-degradation ability than representative strains ATCC27405 and DSM1313. In this work, we determined the draft genome sequence of C. thermocellum PAL5. Genomic DNA was used for whole-genome sequencing using the Illumina HiSeq 2500. We obtained 215 contigs of >200 bp (N50, 78,366 bp; mean length, 17,378 bp). The assembled data were subjected to the National Center for Biotechnology Information (NCBI) Prokaryotic Genome Annotation Pipeline, and 3198 protein-coding sequences, 53 tRNA genes, and 4 rRNA genes were identified. The data are accessible at NCBI (the accession number SBHL00000000). Our data resource will facilitate further studies of efficient cellulose-degradation using C. thermocellum. Elsevier 2019-07-15 /pmc/articles/PMC6685675/ /pubmed/31406903 http://dx.doi.org/10.1016/j.dib.2019.104274 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Immunology and Microbiology Nakazono-Nagaoka, Eiko Fujikawa, Takashi Shikata, Ayumi Tachaapaikoon, Chakrit Waeonukul, Rattiya Pason, Patthra Ratanakhanokchai, Khanok Kosugi, Akihiko Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
title | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
title_full | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
title_fullStr | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
title_full_unstemmed | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
title_short | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
title_sort | draft genome sequence data of clostridium thermocellum pal5 possessing high cellulose-degradation ability |
topic | Immunology and Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685675/ https://www.ncbi.nlm.nih.gov/pubmed/31406903 http://dx.doi.org/10.1016/j.dib.2019.104274 |
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