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A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library

Although DNA computing has exhibited a magical power across diverse areas, current DNA logic gates with different functions are always separately operated and can only produce hard-to-visualize output. The fussy/obligatory gates' redesign/reconstruction and the non-intuitive output cause the wa...

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Autores principales: Fan, Daoqing, Wang, Juan, Wang, Erkang, Dong, Shaojun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686727/
https://www.ncbi.nlm.nih.gov/pubmed/31588299
http://dx.doi.org/10.1039/c9sc01865d
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author Fan, Daoqing
Wang, Juan
Wang, Erkang
Dong, Shaojun
author_facet Fan, Daoqing
Wang, Juan
Wang, Erkang
Dong, Shaojun
author_sort Fan, Daoqing
collection PubMed
description Although DNA computing has exhibited a magical power across diverse areas, current DNA logic gates with different functions are always separately operated and can only produce hard-to-visualize output. The fussy/obligatory gates' redesign/reconstruction and the non-intuitive output cause the wastage of time and costs, low efficiency and practicality. Herein, inspired by the ancient Roman mythical God Janus, for the first time, we propose the concept of “DNA Janus Logic Pair” (DJLP) to classify the DNA logic gates with contrary functions into “Positive + Negative” gates (DJLP = Pos + Neg). Based on the biocatalytic property of G-quadruplex DNAzyme (G4zyme) and the luminescence quenching ability of oxidized 3,3′,5,5′-tetramethylbenzidine (OxTMB) towards the upconversion (UC) particles, we fabricated a universal amphichromatic platform that kills two birds with one stone for operating a versatile DJLP library. Different from the previous DNA logic systems, the “Pos + Neg” gates of each DJLP in this study were concomitantly achieved via the same one-time DNA reaction, which avoided the gates' redesign/reoperation and reduced the operating costs/time of the DNA gates by at least half. Besides, both the amphichromatic outputs (Visual-blue and UC luminescent-green) can be visualized under harmless-NIR, thus bringing greatly enhanced practicality to the method. Moreover, we constructed various concatenated logic circuits via logically modulating the G4zyme's biocatalytic property with glutathione, thus enabling the largely improved computing complexity. Furthermore, taking the circuit “YES-INH-1-2 decoder” as the “computing core”, we designed an “antioxidant indicator” with ratiometric logical responses that could recognize the presence of antioxidants smartly (output changed from “10” to “01”), which provided a typical prototype for potential intelligent bio-applications.
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spelling pubmed-66867272019-10-04 A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library Fan, Daoqing Wang, Juan Wang, Erkang Dong, Shaojun Chem Sci Chemistry Although DNA computing has exhibited a magical power across diverse areas, current DNA logic gates with different functions are always separately operated and can only produce hard-to-visualize output. The fussy/obligatory gates' redesign/reconstruction and the non-intuitive output cause the wastage of time and costs, low efficiency and practicality. Herein, inspired by the ancient Roman mythical God Janus, for the first time, we propose the concept of “DNA Janus Logic Pair” (DJLP) to classify the DNA logic gates with contrary functions into “Positive + Negative” gates (DJLP = Pos + Neg). Based on the biocatalytic property of G-quadruplex DNAzyme (G4zyme) and the luminescence quenching ability of oxidized 3,3′,5,5′-tetramethylbenzidine (OxTMB) towards the upconversion (UC) particles, we fabricated a universal amphichromatic platform that kills two birds with one stone for operating a versatile DJLP library. Different from the previous DNA logic systems, the “Pos + Neg” gates of each DJLP in this study were concomitantly achieved via the same one-time DNA reaction, which avoided the gates' redesign/reoperation and reduced the operating costs/time of the DNA gates by at least half. Besides, both the amphichromatic outputs (Visual-blue and UC luminescent-green) can be visualized under harmless-NIR, thus bringing greatly enhanced practicality to the method. Moreover, we constructed various concatenated logic circuits via logically modulating the G4zyme's biocatalytic property with glutathione, thus enabling the largely improved computing complexity. Furthermore, taking the circuit “YES-INH-1-2 decoder” as the “computing core”, we designed an “antioxidant indicator” with ratiometric logical responses that could recognize the presence of antioxidants smartly (output changed from “10” to “01”), which provided a typical prototype for potential intelligent bio-applications. Royal Society of Chemistry 2019-06-13 /pmc/articles/PMC6686727/ /pubmed/31588299 http://dx.doi.org/10.1039/c9sc01865d Text en This journal is © The Royal Society of Chemistry 2019 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0)
spellingShingle Chemistry
Fan, Daoqing
Wang, Juan
Wang, Erkang
Dong, Shaojun
A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library
title A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library
title_full A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library
title_fullStr A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library
title_full_unstemmed A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library
title_short A Janus-inspired amphichromatic system that kills two birds with one stone for operating a “DNA Janus Logic Pair” (DJLP) library
title_sort janus-inspired amphichromatic system that kills two birds with one stone for operating a “dna janus logic pair” (djlp) library
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686727/
https://www.ncbi.nlm.nih.gov/pubmed/31588299
http://dx.doi.org/10.1039/c9sc01865d
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