Cargando…

De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. ‘Catigan Green Dwarf’) Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species

We report the first whole genome sequence (WGS) assembly and annotation of a dwarf coconut variety, ‘Catigan Green Dwarf’ (CATD). The genome sequence was generated using the PacBio SMRT sequencing platform at 15X coverage of the expected genome size of 2.15 Gbp, which was corrected with assembled 50...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lantican, Darlon V., Strickler, Susan R., Canama, Alma O., Gardoce, Roanne R., Mueller, Lukas A., Galvez, Hayde F.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Genetics Society of America 2019
Materias:	Genome Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686914/ https://www.ncbi.nlm.nih.gov/pubmed/31167834 http://dx.doi.org/10.1534/g3.119.400215

Ejemplares similares

Mining and validation of novel simple sequence repeat (SSR) markers derived from coconut (Cocos nucifera L.) genome assembly
por: Caro, Reina Esther S., et al.
Publicado: (2022)

The genome draft of coconut (Cocos nucifera)
por: Xiao, Yong, et al.
Publicado: (2017)

Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome
por: Aljohi, Hasan Awad, et al.
Publicado: (2016)

Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)
por: Huang, Ya-Yi, et al.
Publicado: (2013)

Fruit Biology of Coconut (Cocos nucifera L.)
por: Beveridge, Fernanda Caro, et al.
Publicado: (2022)

First Report on the Whitefly, Aleurodicus pseudugesii on the Coconut Palm, Cocos nucifera in Brazil
por: de Omena, Rose Paula Mendonça, et al.
Publicado: (2012)

Antioxidant Activity of Coconut (Cocos nucifera L.) Protein Fractions
por: Li, Yan, et al.
Publicado: (2018)

Acoustic dataset of coconut (Cocos nucifera) based on tapping system
por: Caladcad, June Anne, et al.
Publicado: (2023)

Antimicrobial properties of Cocos nucifera (coconut) husk: An extrapolation to oral health
por: Jose, Maji, et al.
Publicado: (2014)

The Chemical Composition and Biological Properties of Coconut (Cocos nucifera L.) Water
por: Yong, Jean W. H., et al.
Publicado: (2009)

Independent Origins of Cultivated Coconut (Cocos nucifera L.) in the Old World Tropics
por: Gunn, Bee F., et al.
Publicado: (2011)

Population structures of Brazilian tall coconut (Cocos nucifera L.) by microsatellite markers
por: Ribeiro, Francisco E., et al.
Publicado: (2010)

Identification and Characterisation of Endophytic Bacteria from Coconut (Cocos nucifera) Tissue Culture
por: Salo, Elv Nhiel, et al.
Publicado: (2020)

Dataset of dual RNA-sequencing of Phytophthora palmivora infecting coconut (Cocos nucifera L.)
por: Gangaraj, K.P., et al.
Publicado: (2020)

Bacillus cereus Improves Performance of Brazilian Green Dwarf Coconut Palms Seedlings With Reduced Chemical Fertilization
por: Cardoso, Aline Figueiredo, et al.
Publicado: (2021)

A new species of Callispa Baly (Coleoptera, Chrysomelidae, Cassidinae, Callispini) infesting coconut palm ( Cocos nucifera L.) in India
por: Shameem, K. M., et al.
Publicado: (2013)

Analysis of the antiparasitic and anticancer activity of the coconut palm (Cocos nucifera L. ARECACEAE) from the natural reserve of Punta Patiño, Darién
por: Tayler, Nicole M., et al.
Publicado: (2019)

Genetic Relationships among Tall Coconut Palm (Cocos nucifera L.) Accessions of the International Coconut Genebank for Latin America and the Caribbean (ICG-LAC), Evaluated Using Microsatellite Markers (SSRs)
por: Loiola, Carina Mendes, et al.
Publicado: (2016)

Batrachedra nuciferae, an Inflorescence-Feeding Moth Associated with Coconut, Cocos nucifera, and Palmiste, Roystonea oleracea, in Trinidad, West Indies
por: Cock, Matthew J. W.
Publicado: (2013)

Exploring the influence of sterilisation and storage on some physicochemical properties of coconut (Cocos nucifera L.) water
por: Awua, Adolf K, et al.
Publicado: (2011)

Antibacterial Efficacy of Tender Coconut Water (Cocos nucifera L) on Streptococcus mutans: An In-Vitro Study
por: Rukmini, J. N., et al.
Publicado: (2017)

Coconut (Cocos nucifera L.) sap as a potential source of sugar: Antioxidant and nutritional properties
por: Asghar, Muhammad Tuseef, et al.
Publicado: (2019)

Hierarchical Structure of the Cocos nucifera (Coconut) Endocarp: Functional Morphology and its Influence on Fracture Toughness
por: Schmier, Stefanie, et al.
Publicado: (2020)

Understanding Physiology and Impacts of High Temperature Stress on the Progamic Phase of Coconut (Cocos nucifera L.)
por: Hebbar, K. B., et al.
Publicado: (2020)

Procedure for Spaced Mesh Modeling from Digital Images: Example of the Leaf Sheath of the Coconut Palm Cocos Nucifera L. (2D)
por: Nagau, Jimmy, et al.
Publicado: (2022)

Cost-benefit of trapping and population fluctuation of Rhynchophorus palmarum L. in coconut (Cocos nucifera L.) genotypes
por: de la Mora-Castañeda, Jesús G., et al.
Publicado: (2022)

Genetic relationship and diversity among coconut (Cocos nucifera L.) accessions revealed through SCoT analysis
por: Rajesh, M. K., et al.
Publicado: (2015)

Morphological and Molecular Identification of Plant Pathogenic Fungi Associated with Dirty Panicle Disease in Coconuts (Cocos nucifera) in Thailand
por: Sunpapao, Anurag, et al.
Publicado: (2022)

Contemporary Developments and Emerging Trends in the Application of Spectroscopy Techniques: A Particular Reference to Coconut (Cocos nucifera L.)
por: Pandiselvam, Ravi, et al.
Publicado: (2022)

Insight of the Functional and Biological Activities of Coconut (Cocos nucifera L.) Protein by Proteomics Analysis and Protein-Based Bioinformatics
por: Ma, Jingrong, et al.
Publicado: (2022)

Effects of Black Cumin Seed (Nigella sativa) and Coconut Meals (Cocos nucifera) on Broiler Performance and Cecal Microbiota
por: Zaazaa, Ahmed, et al.
Publicado: (2023)

Integrated Transcriptomic and Metabolomics Analyses Reveal Molecular Responses to Cold Stress in Coconut (Cocos nucifera L.) Seedlings
por: Lu, Lilan, et al.
Publicado: (2023)

Antimicrobial and antioxidant potential of the silver nanoparticles synthesized using aqueous extracts of coconut meat (Cocos nucifera L)
por: Rizwana, Humaira, et al.
Publicado: (2023)

Coconut (Cocos nucifera) tree disease dataset: A dataset for disease detection and classification for machine learning applications
por: Thite, Sandip, et al.
Publicado: (2023)

Long-term consumption of virgin coconut (Cocos nucifera) oil diet impairs learning and memory in CD1 mice
por: Bisong, Sunday A., et al.
Publicado: (2020)

Primary Root Excision Induces ERF071, Which Mediates the Development of Lateral Roots in Makapuno Coconut (Cocos nucifera)
por: Thuzar, Mya, et al.
Publicado: (2022)

Potential of Distilled Liquid Smoke Derived from Coconut ( Cocos nucifera L) Shell for Traumatic Ulcer Healing in Diabetic Rats
por: Surboyo, Meircurius Dwi Condro, et al.
Publicado: (2019)

Chemical Composition, Nutritive Value, Volatile Profiles and Antioxidant Activity of Coconut (Cocos nucifera L.) Haustorium with Different Transverse Diameter
por: Zhang, Yufeng, et al.
Publicado: (2022)

Integrated transcriptomic and metabolomic analyses reveal key metabolic pathways in response to potassium deficiency in coconut (Cocos nucifera L.) seedlings
por: Lu, Lilan, et al.
Publicado: (2023)

Corrigendum to “acoustic dataset of coconut (cocos nucifera) based on tapping system” [Data in Brief, Volume 47, April 2023, 108936]
por: Caladcad, June Anne, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_csg1q6i6r334va3msvuca188h1