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Large scale detailed mapping of dengue vector breeding sites using street view images

Targeted environmental and ecosystem management remain crucial in control of dengue. However, providing detailed environmental information on a large scale to effectively target dengue control efforts remains a challenge. An important piece of such information is the extent of the presence of potent...

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Autores principales: Haddawy, Peter, Wettayakorn, Poom, Nonthaleerak, Boonpakorn, Su Yin, Myat, Wiratsudakul, Anuwat, Schöning, Johannes, Laosiritaworn, Yongjua, Balla, Klestia, Euaungkanakul, Sirinut, Quengdaeng, Papichaya, Choknitipakin, Kittipop, Traivijitkhun, Siripong, Erawan, Benyarut, Kraisang, Thansuda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687207/
https://www.ncbi.nlm.nih.gov/pubmed/31356617
http://dx.doi.org/10.1371/journal.pntd.0007555
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author Haddawy, Peter
Wettayakorn, Poom
Nonthaleerak, Boonpakorn
Su Yin, Myat
Wiratsudakul, Anuwat
Schöning, Johannes
Laosiritaworn, Yongjua
Balla, Klestia
Euaungkanakul, Sirinut
Quengdaeng, Papichaya
Choknitipakin, Kittipop
Traivijitkhun, Siripong
Erawan, Benyarut
Kraisang, Thansuda
author_facet Haddawy, Peter
Wettayakorn, Poom
Nonthaleerak, Boonpakorn
Su Yin, Myat
Wiratsudakul, Anuwat
Schöning, Johannes
Laosiritaworn, Yongjua
Balla, Klestia
Euaungkanakul, Sirinut
Quengdaeng, Papichaya
Choknitipakin, Kittipop
Traivijitkhun, Siripong
Erawan, Benyarut
Kraisang, Thansuda
author_sort Haddawy, Peter
collection PubMed
description Targeted environmental and ecosystem management remain crucial in control of dengue. However, providing detailed environmental information on a large scale to effectively target dengue control efforts remains a challenge. An important piece of such information is the extent of the presence of potential dengue vector breeding sites, which consist primarily of open containers such as ceramic jars, buckets, old tires, and flowerpots. In this paper we present the design and implementation of a pipeline to detect outdoor open containers which constitute potential dengue vector breeding sites from geotagged images and to create highly detailed container density maps at unprecedented scale. We implement the approach using Google Street View images which have the advantage of broad coverage and of often being two to three years old which allows correlation analyses of container counts against historical data from manual surveys. Containers comprising eight of the most common breeding sites are detected in the images using convolutional neural network transfer learning. Over a test set of images the object recognition algorithm has an accuracy of 0.91 in terms of F-score. Container density counts are generated and displayed on a decision support dashboard. Analyses of the approach are carried out over three provinces in Thailand. The container counts obtained agree well with container counts from available manual surveys. Multi-variate linear regression relating densities of the eight container types to larval survey data shows good prediction of larval index values with an R-squared of 0.674. To delineate conditions under which the container density counts are indicative of larval counts, a number of factors affecting correlation with larval survey data are analyzed. We conclude that creation of container density maps from geotagged images is a promising approach to providing detailed risk maps at large scale.
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spelling pubmed-66872072019-08-15 Large scale detailed mapping of dengue vector breeding sites using street view images Haddawy, Peter Wettayakorn, Poom Nonthaleerak, Boonpakorn Su Yin, Myat Wiratsudakul, Anuwat Schöning, Johannes Laosiritaworn, Yongjua Balla, Klestia Euaungkanakul, Sirinut Quengdaeng, Papichaya Choknitipakin, Kittipop Traivijitkhun, Siripong Erawan, Benyarut Kraisang, Thansuda PLoS Negl Trop Dis Research Article Targeted environmental and ecosystem management remain crucial in control of dengue. However, providing detailed environmental information on a large scale to effectively target dengue control efforts remains a challenge. An important piece of such information is the extent of the presence of potential dengue vector breeding sites, which consist primarily of open containers such as ceramic jars, buckets, old tires, and flowerpots. In this paper we present the design and implementation of a pipeline to detect outdoor open containers which constitute potential dengue vector breeding sites from geotagged images and to create highly detailed container density maps at unprecedented scale. We implement the approach using Google Street View images which have the advantage of broad coverage and of often being two to three years old which allows correlation analyses of container counts against historical data from manual surveys. Containers comprising eight of the most common breeding sites are detected in the images using convolutional neural network transfer learning. Over a test set of images the object recognition algorithm has an accuracy of 0.91 in terms of F-score. Container density counts are generated and displayed on a decision support dashboard. Analyses of the approach are carried out over three provinces in Thailand. The container counts obtained agree well with container counts from available manual surveys. Multi-variate linear regression relating densities of the eight container types to larval survey data shows good prediction of larval index values with an R-squared of 0.674. To delineate conditions under which the container density counts are indicative of larval counts, a number of factors affecting correlation with larval survey data are analyzed. We conclude that creation of container density maps from geotagged images is a promising approach to providing detailed risk maps at large scale. Public Library of Science 2019-07-29 /pmc/articles/PMC6687207/ /pubmed/31356617 http://dx.doi.org/10.1371/journal.pntd.0007555 Text en © 2019 Haddawy et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Haddawy, Peter
Wettayakorn, Poom
Nonthaleerak, Boonpakorn
Su Yin, Myat
Wiratsudakul, Anuwat
Schöning, Johannes
Laosiritaworn, Yongjua
Balla, Klestia
Euaungkanakul, Sirinut
Quengdaeng, Papichaya
Choknitipakin, Kittipop
Traivijitkhun, Siripong
Erawan, Benyarut
Kraisang, Thansuda
Large scale detailed mapping of dengue vector breeding sites using street view images
title Large scale detailed mapping of dengue vector breeding sites using street view images
title_full Large scale detailed mapping of dengue vector breeding sites using street view images
title_fullStr Large scale detailed mapping of dengue vector breeding sites using street view images
title_full_unstemmed Large scale detailed mapping of dengue vector breeding sites using street view images
title_short Large scale detailed mapping of dengue vector breeding sites using street view images
title_sort large scale detailed mapping of dengue vector breeding sites using street view images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687207/
https://www.ncbi.nlm.nih.gov/pubmed/31356617
http://dx.doi.org/10.1371/journal.pntd.0007555
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