Cargando…

Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients

BACKGROUND: Primary ciliary dyskinesia (PCD) is a relatively rare autosomal recessive or X‐linked disorder affecting ciliary function. In the set of causative genes, however, predominant pathogenic variants remain unknown in Asia. METHOD: A diagnosis of PCD was made following a modern comprehensive...

Descripción completa

Detalles Bibliográficos
Autores principales: Morimoto, Kozo, Hijikata, Minako, Zariwala, Maimoona A., Nykamp, Keith, Inaba, Atsushi, Guo, Tz‐Chun, Yamada, Hiroyuki, Truty, Rebecca, Sasaki, Yuka, Ohta, Ken, Kudoh, Shoji, Leigh, Margaret W., Knowles, Michael R., Keicho, Naoto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687623/
https://www.ncbi.nlm.nih.gov/pubmed/31270959
http://dx.doi.org/10.1002/mgg3.838
_version_ 1783442742197616640
author Morimoto, Kozo
Hijikata, Minako
Zariwala, Maimoona A.
Nykamp, Keith
Inaba, Atsushi
Guo, Tz‐Chun
Yamada, Hiroyuki
Truty, Rebecca
Sasaki, Yuka
Ohta, Ken
Kudoh, Shoji
Leigh, Margaret W.
Knowles, Michael R.
Keicho, Naoto
author_facet Morimoto, Kozo
Hijikata, Minako
Zariwala, Maimoona A.
Nykamp, Keith
Inaba, Atsushi
Guo, Tz‐Chun
Yamada, Hiroyuki
Truty, Rebecca
Sasaki, Yuka
Ohta, Ken
Kudoh, Shoji
Leigh, Margaret W.
Knowles, Michael R.
Keicho, Naoto
author_sort Morimoto, Kozo
collection PubMed
description BACKGROUND: Primary ciliary dyskinesia (PCD) is a relatively rare autosomal recessive or X‐linked disorder affecting ciliary function. In the set of causative genes, however, predominant pathogenic variants remain unknown in Asia. METHOD: A diagnosis of PCD was made following a modern comprehensive testing including genetic analysis; targeted resequencing for screening variants, and Sanger sequencing for determination of the breakpoints, with an additional review of databases to calculate the deletion frequency. A multiplexed PCR‐based detection method has also been developed. RESULTS: We ascertained a 50‐year‐old Japanese male who had been diagnosed with diffuse panbronchiolitis (DPB), but refractory to macrolide therapy. We reevaluated the case and identified a large homozygous deletion spanning exons 1 to 4 of the DRC1 and determined the breakpoints (NM_145038.4: c.1‐3952_540 + 1331del27748‐bp). In the PCD cohort at the University of North Carolina, we found a female PCD patient of Korean descent harboring the same homozygous deletion. From the Invitae testing cohort, we extracted four carriers of the same deletion among 965 Asian individuals, whereas no deletion was found in the 23,951 non‐Asians. CONCLUSION: We speculate that the DRC1 deletion is a recurrent or perhaps founder mutation in Asians. The simple PCR method could be a useful screening tool.
format Online
Article
Text
id pubmed-6687623
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-66876232019-08-14 Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients Morimoto, Kozo Hijikata, Minako Zariwala, Maimoona A. Nykamp, Keith Inaba, Atsushi Guo, Tz‐Chun Yamada, Hiroyuki Truty, Rebecca Sasaki, Yuka Ohta, Ken Kudoh, Shoji Leigh, Margaret W. Knowles, Michael R. Keicho, Naoto Mol Genet Genomic Med Original Articles BACKGROUND: Primary ciliary dyskinesia (PCD) is a relatively rare autosomal recessive or X‐linked disorder affecting ciliary function. In the set of causative genes, however, predominant pathogenic variants remain unknown in Asia. METHOD: A diagnosis of PCD was made following a modern comprehensive testing including genetic analysis; targeted resequencing for screening variants, and Sanger sequencing for determination of the breakpoints, with an additional review of databases to calculate the deletion frequency. A multiplexed PCR‐based detection method has also been developed. RESULTS: We ascertained a 50‐year‐old Japanese male who had been diagnosed with diffuse panbronchiolitis (DPB), but refractory to macrolide therapy. We reevaluated the case and identified a large homozygous deletion spanning exons 1 to 4 of the DRC1 and determined the breakpoints (NM_145038.4: c.1‐3952_540 + 1331del27748‐bp). In the PCD cohort at the University of North Carolina, we found a female PCD patient of Korean descent harboring the same homozygous deletion. From the Invitae testing cohort, we extracted four carriers of the same deletion among 965 Asian individuals, whereas no deletion was found in the 23,951 non‐Asians. CONCLUSION: We speculate that the DRC1 deletion is a recurrent or perhaps founder mutation in Asians. The simple PCR method could be a useful screening tool. John Wiley and Sons Inc. 2019-07-04 /pmc/articles/PMC6687623/ /pubmed/31270959 http://dx.doi.org/10.1002/mgg3.838 Text en © 2019 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Morimoto, Kozo
Hijikata, Minako
Zariwala, Maimoona A.
Nykamp, Keith
Inaba, Atsushi
Guo, Tz‐Chun
Yamada, Hiroyuki
Truty, Rebecca
Sasaki, Yuka
Ohta, Ken
Kudoh, Shoji
Leigh, Margaret W.
Knowles, Michael R.
Keicho, Naoto
Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients
title Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients
title_full Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients
title_fullStr Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients
title_full_unstemmed Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients
title_short Recurring large deletion in DRC1 (CCDC164) identified as causing primary ciliary dyskinesia in two Asian patients
title_sort recurring large deletion in drc1 (ccdc164) identified as causing primary ciliary dyskinesia in two asian patients
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687623/
https://www.ncbi.nlm.nih.gov/pubmed/31270959
http://dx.doi.org/10.1002/mgg3.838
work_keys_str_mv AT morimotokozo recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT hijikataminako recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT zariwalamaimoonaa recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT nykampkeith recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT inabaatsushi recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT guotzchun recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT yamadahiroyuki recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT trutyrebecca recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT sasakiyuka recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT ohtaken recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT kudohshoji recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT leighmargaretw recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT knowlesmichaelr recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients
AT keichonaoto recurringlargedeletionindrc1ccdc164identifiedascausingprimaryciliarydyskinesiaintwoasianpatients