octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine

The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.

Detalles Bibliográficos
Autores principales: Chang, Jennifer, Anderson, Tavis K., Zeller, Michael A., Gauger, Phillip C., Vincent, Amy L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Protocols and Workflows
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687928/
https://www.ncbi.nlm.nih.gov/pubmed/31395641
http://dx.doi.org/10.1128/MRA.00673-19
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author Chang, Jennifer
Anderson, Tavis K.
Zeller, Michael A.
Gauger, Phillip C.
Vincent, Amy L.
author_facet Chang, Jennifer
Anderson, Tavis K.
Zeller, Michael A.
Gauger, Phillip C.
Vincent, Amy L.
author_sort Chang, Jennifer
collection PubMed
description The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.
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spelling pubmed-66879282019-08-13 octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine Chang, Jennifer Anderson, Tavis K. Zeller, Michael A. Gauger, Phillip C. Vincent, Amy L. Microbiol Resour Announc Protocols and Workflows The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments. American Society for Microbiology 2019-08-08 /pmc/articles/PMC6687928/ /pubmed/31395641 http://dx.doi.org/10.1128/MRA.00673-19 Text en https://doi.org/10.1128/AuthorWarrantyLicense.v1 This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply.
spellingShingle Protocols and Workflows
Chang, Jennifer
Anderson, Tavis K.
Zeller, Michael A.
Gauger, Phillip C.
Vincent, Amy L.
octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
title octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
title_full octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
title_fullStr octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
title_full_unstemmed octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
title_short octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine
title_sort octoflu: automated classification for the evolutionary origin of influenza a virus gene sequences detected in u.s. swine
topic Protocols and Workflows
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687928/
https://www.ncbi.nlm.nih.gov/pubmed/31395641
http://dx.doi.org/10.1128/MRA.00673-19
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