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PUG-View: programmatic access to chemical annotations integrated in PubChem

PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive rese...

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Detalles Bibliográficos
Autores principales: Kim, Sunghwan, Thiessen, Paul A., Cheng, Tiejun, Zhang, Jian, Gindulyte, Asta, Bolton, Evan E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6688265/
https://www.ncbi.nlm.nih.gov/pubmed/31399858
http://dx.doi.org/10.1186/s13321-019-0375-2
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author Kim, Sunghwan
Thiessen, Paul A.
Cheng, Tiejun
Zhang, Jian
Gindulyte, Asta
Bolton, Evan E.
author_facet Kim, Sunghwan
Thiessen, Paul A.
Cheng, Tiejun
Zhang, Jian
Gindulyte, Asta
Bolton, Evan E.
author_sort Kim, Sunghwan
collection PubMed
description PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive research. PubChem provides several programmatic access routes. One of these is PUG-View, which is a Representational State Transfer (REST)-style web service interface specialized for accessing annotation data contained in PubChem. The present paper describes various aspects of PUG-View, including the scope of data accessible through PUG-View, the syntax for formulating a PUG-View request URL, the difference of PUG-View from other web service interfaces in PubChem, and its limitations and usage policies.
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spelling pubmed-66882652019-08-15 PUG-View: programmatic access to chemical annotations integrated in PubChem Kim, Sunghwan Thiessen, Paul A. Cheng, Tiejun Zhang, Jian Gindulyte, Asta Bolton, Evan E. J Cheminform Database PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive research. PubChem provides several programmatic access routes. One of these is PUG-View, which is a Representational State Transfer (REST)-style web service interface specialized for accessing annotation data contained in PubChem. The present paper describes various aspects of PUG-View, including the scope of data accessible through PUG-View, the syntax for formulating a PUG-View request URL, the difference of PUG-View from other web service interfaces in PubChem, and its limitations and usage policies. Springer International Publishing 2019-08-09 /pmc/articles/PMC6688265/ /pubmed/31399858 http://dx.doi.org/10.1186/s13321-019-0375-2 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Database
Kim, Sunghwan
Thiessen, Paul A.
Cheng, Tiejun
Zhang, Jian
Gindulyte, Asta
Bolton, Evan E.
PUG-View: programmatic access to chemical annotations integrated in PubChem
title PUG-View: programmatic access to chemical annotations integrated in PubChem
title_full PUG-View: programmatic access to chemical annotations integrated in PubChem
title_fullStr PUG-View: programmatic access to chemical annotations integrated in PubChem
title_full_unstemmed PUG-View: programmatic access to chemical annotations integrated in PubChem
title_short PUG-View: programmatic access to chemical annotations integrated in PubChem
title_sort pug-view: programmatic access to chemical annotations integrated in pubchem
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6688265/
https://www.ncbi.nlm.nih.gov/pubmed/31399858
http://dx.doi.org/10.1186/s13321-019-0375-2
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