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Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network
Atomic and molecular properties could be evaluated from the fundamental Schrodinger’s equation and therefore represent different modalities of the same quantum phenomena. Here, we present AIMNet, a modular and chemically inspired deep neural network potential. We used AIMNet with multitarget trainin...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6688864/ https://www.ncbi.nlm.nih.gov/pubmed/31448325 http://dx.doi.org/10.1126/sciadv.aav6490 |
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author | Zubatyuk, Roman Smith, Justin S. Leszczynski, Jerzy Isayev, Olexandr |
author_facet | Zubatyuk, Roman Smith, Justin S. Leszczynski, Jerzy Isayev, Olexandr |
author_sort | Zubatyuk, Roman |
collection | PubMed |
description | Atomic and molecular properties could be evaluated from the fundamental Schrodinger’s equation and therefore represent different modalities of the same quantum phenomena. Here, we present AIMNet, a modular and chemically inspired deep neural network potential. We used AIMNet with multitarget training to learn multiple modalities of the state of the atom in a molecular system. The resulting model shows on several benchmark datasets state-of-the-art accuracy, comparable to the results of orders of magnitude more expensive DFT methods. It can simultaneously predict several atomic and molecular properties without an increase in the computational cost. With AIMNet, we show a new dimension of transferability: the ability to learn new targets using multimodal information from previous training. The model can learn implicit solvation energy (SMD method) using only a fraction of the original training data and an archive median absolute deviation error of 1.1 kcal/mol compared to experimental solvation free energies in the MNSol database. |
format | Online Article Text |
id | pubmed-6688864 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-66888642019-08-23 Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network Zubatyuk, Roman Smith, Justin S. Leszczynski, Jerzy Isayev, Olexandr Sci Adv Research Articles Atomic and molecular properties could be evaluated from the fundamental Schrodinger’s equation and therefore represent different modalities of the same quantum phenomena. Here, we present AIMNet, a modular and chemically inspired deep neural network potential. We used AIMNet with multitarget training to learn multiple modalities of the state of the atom in a molecular system. The resulting model shows on several benchmark datasets state-of-the-art accuracy, comparable to the results of orders of magnitude more expensive DFT methods. It can simultaneously predict several atomic and molecular properties without an increase in the computational cost. With AIMNet, we show a new dimension of transferability: the ability to learn new targets using multimodal information from previous training. The model can learn implicit solvation energy (SMD method) using only a fraction of the original training data and an archive median absolute deviation error of 1.1 kcal/mol compared to experimental solvation free energies in the MNSol database. American Association for the Advancement of Science 2019-08-09 /pmc/articles/PMC6688864/ /pubmed/31448325 http://dx.doi.org/10.1126/sciadv.aav6490 Text en Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (http://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited. |
spellingShingle | Research Articles Zubatyuk, Roman Smith, Justin S. Leszczynski, Jerzy Isayev, Olexandr Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
title | Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
title_full | Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
title_fullStr | Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
title_full_unstemmed | Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
title_short | Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
title_sort | accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6688864/ https://www.ncbi.nlm.nih.gov/pubmed/31448325 http://dx.doi.org/10.1126/sciadv.aav6490 |
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