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Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes
In silico approaches have served a central role in the development of evolutionary theory for generations. This especially applies to the concept of the fitness landscape, one of the most important abstractions in evolutionary genetics, and one which has benefited from the presence of large empirica...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6690511/ https://www.ncbi.nlm.nih.gov/pubmed/31404101 http://dx.doi.org/10.1371/journal.pone.0220891 |
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author | Meszaros, Victor A. Miller-Dickson, Miles D. Ogbunugafor, C. Brandon |
author_facet | Meszaros, Victor A. Miller-Dickson, Miles D. Ogbunugafor, C. Brandon |
author_sort | Meszaros, Victor A. |
collection | PubMed |
description | In silico approaches have served a central role in the development of evolutionary theory for generations. This especially applies to the concept of the fitness landscape, one of the most important abstractions in evolutionary genetics, and one which has benefited from the presence of large empirical data sets only in the last decade or so. In this study, we propose a method that allows us to generate enormous data sets that walk the line between in silico and empirical: word usage frequencies as catalogued by the Google ngram corpora. These data can be codified or analogized in terms of a multidimensional empirical fitness landscape towards the examination of advanced concepts—adaptive landscape by environment interactions, clonal competition, higher-order epistasis and countless others. We argue that the greater Lexical Landscapes approach can serve as a platform that offers an astronomical number of fitness landscapes for exploration (at least) or theoretical formalism (potentially) in evolutionary biology. |
format | Online Article Text |
id | pubmed-6690511 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-66905112019-08-15 Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes Meszaros, Victor A. Miller-Dickson, Miles D. Ogbunugafor, C. Brandon PLoS One Research Article In silico approaches have served a central role in the development of evolutionary theory for generations. This especially applies to the concept of the fitness landscape, one of the most important abstractions in evolutionary genetics, and one which has benefited from the presence of large empirical data sets only in the last decade or so. In this study, we propose a method that allows us to generate enormous data sets that walk the line between in silico and empirical: word usage frequencies as catalogued by the Google ngram corpora. These data can be codified or analogized in terms of a multidimensional empirical fitness landscape towards the examination of advanced concepts—adaptive landscape by environment interactions, clonal competition, higher-order epistasis and countless others. We argue that the greater Lexical Landscapes approach can serve as a platform that offers an astronomical number of fitness landscapes for exploration (at least) or theoretical formalism (potentially) in evolutionary biology. Public Library of Science 2019-08-12 /pmc/articles/PMC6690511/ /pubmed/31404101 http://dx.doi.org/10.1371/journal.pone.0220891 Text en © 2019 Meszaros et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Meszaros, Victor A. Miller-Dickson, Miles D. Ogbunugafor, C. Brandon Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes |
title | Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes |
title_full | Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes |
title_fullStr | Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes |
title_full_unstemmed | Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes |
title_short | Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes |
title_sort | lexical landscapes as large in silico data for examining advanced properties of fitness landscapes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6690511/ https://www.ncbi.nlm.nih.gov/pubmed/31404101 http://dx.doi.org/10.1371/journal.pone.0220891 |
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