Cargando…

iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network

We propose iW-Net, a deep learning model that allows for both automatic and interactive segmentation of lung nodules in computed tomography images. iW-Net is composed of two blocks: the first one provides an automatic segmentation and the second one allows to correct it by analyzing 2 points introdu...

Descripción completa

Detalles Bibliográficos
Autores principales: Aresta, Guilherme, Jacobs, Colin, Araújo, Teresa, Cunha, António, Ramos, Isabel, van Ginneken, Bram, Campilho, Aurélio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6690893/
https://www.ncbi.nlm.nih.gov/pubmed/31406194
http://dx.doi.org/10.1038/s41598-019-48004-8
_version_ 1783443249177821184
author Aresta, Guilherme
Jacobs, Colin
Araújo, Teresa
Cunha, António
Ramos, Isabel
van Ginneken, Bram
Campilho, Aurélio
author_facet Aresta, Guilherme
Jacobs, Colin
Araújo, Teresa
Cunha, António
Ramos, Isabel
van Ginneken, Bram
Campilho, Aurélio
author_sort Aresta, Guilherme
collection PubMed
description We propose iW-Net, a deep learning model that allows for both automatic and interactive segmentation of lung nodules in computed tomography images. iW-Net is composed of two blocks: the first one provides an automatic segmentation and the second one allows to correct it by analyzing 2 points introduced by the user in the nodule’s boundary. For this purpose, a physics inspired weight map that takes the user input into account is proposed, which is used both as a feature map and in the system’s loss function. Our approach is extensively evaluated on the public LIDC-IDRI dataset, where we achieve a state-of-the-art performance of 0.55 intersection over union vs the 0.59 inter-observer agreement. Also, we show that iW-Net allows to correct the segmentation of small nodules, essential for proper patient referral decision, as well as improve the segmentation of the challenging non-solid nodules and thus may be an important tool for increasing the early diagnosis of lung cancer.
format Online
Article
Text
id pubmed-6690893
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-66908932019-08-15 iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network Aresta, Guilherme Jacobs, Colin Araújo, Teresa Cunha, António Ramos, Isabel van Ginneken, Bram Campilho, Aurélio Sci Rep Article We propose iW-Net, a deep learning model that allows for both automatic and interactive segmentation of lung nodules in computed tomography images. iW-Net is composed of two blocks: the first one provides an automatic segmentation and the second one allows to correct it by analyzing 2 points introduced by the user in the nodule’s boundary. For this purpose, a physics inspired weight map that takes the user input into account is proposed, which is used both as a feature map and in the system’s loss function. Our approach is extensively evaluated on the public LIDC-IDRI dataset, where we achieve a state-of-the-art performance of 0.55 intersection over union vs the 0.59 inter-observer agreement. Also, we show that iW-Net allows to correct the segmentation of small nodules, essential for proper patient referral decision, as well as improve the segmentation of the challenging non-solid nodules and thus may be an important tool for increasing the early diagnosis of lung cancer. Nature Publishing Group UK 2019-08-12 /pmc/articles/PMC6690893/ /pubmed/31406194 http://dx.doi.org/10.1038/s41598-019-48004-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Aresta, Guilherme
Jacobs, Colin
Araújo, Teresa
Cunha, António
Ramos, Isabel
van Ginneken, Bram
Campilho, Aurélio
iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network
title iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network
title_full iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network
title_fullStr iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network
title_full_unstemmed iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network
title_short iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network
title_sort iw-net: an automatic and minimalistic interactive lung nodule segmentation deep network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6690893/
https://www.ncbi.nlm.nih.gov/pubmed/31406194
http://dx.doi.org/10.1038/s41598-019-48004-8
work_keys_str_mv AT arestaguilherme iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork
AT jacobscolin iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork
AT araujoteresa iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork
AT cunhaantonio iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork
AT ramosisabel iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork
AT vanginnekenbram iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork
AT campilhoaurelio iwnetanautomaticandminimalisticinteractivelungnodulesegmentationdeepnetwork