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UbiHub: a data hub for the explorers of ubiquitination pathways
MOTIVATION: Protein ubiquitination plays a central role in important cellular machineries such as protein degradation or chromatin-mediated signaling. With the recent discovery of the first potent ubiquitin-specific protease inhibitors, and the maturation of proteolysis targeting chimeras as promisi...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6691330/ https://www.ncbi.nlm.nih.gov/pubmed/30601939 http://dx.doi.org/10.1093/bioinformatics/bty1067 |
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author | Liu, Lihua Damerell, David R Koukouflis, Leonidas Tong, Yufeng Marsden, Brian D Schapira, Matthieu |
author_facet | Liu, Lihua Damerell, David R Koukouflis, Leonidas Tong, Yufeng Marsden, Brian D Schapira, Matthieu |
author_sort | Liu, Lihua |
collection | PubMed |
description | MOTIVATION: Protein ubiquitination plays a central role in important cellular machineries such as protein degradation or chromatin-mediated signaling. With the recent discovery of the first potent ubiquitin-specific protease inhibitors, and the maturation of proteolysis targeting chimeras as promising chemical tools to exploit the ubiquitin-proteasome system, protein target classes associated with ubiquitination pathways are becoming the focus of intense drug-discovery efforts. RESULTS: We have developed UbiHub, an online resource that can be used to visualize a diverse array of biological, structural and chemical data on phylogenetic trees of human protein families involved in ubiquitination signaling, including E3 ligases and deubiquitinases. This interface can inform target prioritization and drug design, and serves as a navigation tool for medicinal chemists, structural and cell biologists exploring ubiquitination pathways. AVAILABILITY AND IMPLEMENTATION: https://ubihub.thesgc.org. |
format | Online Article Text |
id | pubmed-6691330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-66913302019-08-16 UbiHub: a data hub for the explorers of ubiquitination pathways Liu, Lihua Damerell, David R Koukouflis, Leonidas Tong, Yufeng Marsden, Brian D Schapira, Matthieu Bioinformatics Applications Notes MOTIVATION: Protein ubiquitination plays a central role in important cellular machineries such as protein degradation or chromatin-mediated signaling. With the recent discovery of the first potent ubiquitin-specific protease inhibitors, and the maturation of proteolysis targeting chimeras as promising chemical tools to exploit the ubiquitin-proteasome system, protein target classes associated with ubiquitination pathways are becoming the focus of intense drug-discovery efforts. RESULTS: We have developed UbiHub, an online resource that can be used to visualize a diverse array of biological, structural and chemical data on phylogenetic trees of human protein families involved in ubiquitination signaling, including E3 ligases and deubiquitinases. This interface can inform target prioritization and drug design, and serves as a navigation tool for medicinal chemists, structural and cell biologists exploring ubiquitination pathways. AVAILABILITY AND IMPLEMENTATION: https://ubihub.thesgc.org. Oxford University Press 2019-08-15 2019-01-02 /pmc/articles/PMC6691330/ /pubmed/30601939 http://dx.doi.org/10.1093/bioinformatics/bty1067 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Liu, Lihua Damerell, David R Koukouflis, Leonidas Tong, Yufeng Marsden, Brian D Schapira, Matthieu UbiHub: a data hub for the explorers of ubiquitination pathways |
title | UbiHub: a data hub for the explorers of ubiquitination pathways |
title_full | UbiHub: a data hub for the explorers of ubiquitination pathways |
title_fullStr | UbiHub: a data hub for the explorers of ubiquitination pathways |
title_full_unstemmed | UbiHub: a data hub for the explorers of ubiquitination pathways |
title_short | UbiHub: a data hub for the explorers of ubiquitination pathways |
title_sort | ubihub: a data hub for the explorers of ubiquitination pathways |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6691330/ https://www.ncbi.nlm.nih.gov/pubmed/30601939 http://dx.doi.org/10.1093/bioinformatics/bty1067 |
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